RchiOBHm_Chr1g0334031

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019850
Physical Location & Seq
Reverse (-)
26116848 .. 26117519
672 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56279

Sequence Viewer

Length: 279 bp
ATGTTGTATCAAAGCCCTCATTTAAGTCAGAAAGATTTCCAGTGCGAACCTTGGTTTGGGTCACTTTATACTGAGGAAGATGTATCTCCATCTTTGATAGATTTGTGGAAGGACCATCCAGAAATTGATGTTTCATTGCATCTCCCAGAAAAGAATGAGTTCATTCCTACTGATTTTTCCGTTTGTTCTGATGGTCTTGATACTACAGATACAGCTTCTCCGATATGTATATTGGATGAGCCATTGGTGAAATTCTGGTACAAACTTGATTGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

92

Amino Acids

10.63

Weight (kDa)

4.12

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 8 - 90 9.5e-21 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019850)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0333071 RchiOBHm_Chr1g0334031
rosa_laevigata RLG00000029515
rosa_multiflora Rmu_sc0000026.1_g000011 Rmu_sc0002722.1_g000012
rosa_samantha Rh1AG130100 Rh1CG123900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 251
AfaI GTAC 2 cut(s) 260, 274
AfiI CCNNNNNNNGG 1 cut(s) 56
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
ApoI RAATTY 1 cut(s) 251
Asp700I GAANNNNTTC 2 cut(s) 35, 158
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 259
AvaII GGWCC 1 cut(s) 112
BccI CCATC 3 cut(s) 97, 123, 185
BfmI CTRYAG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmsI GCATC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 2 cut(s) 115, 241
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 115, 241
BstSFI CTRYAG 1 cut(s) 204
BtsCI GGATG 2 cut(s) 115, 241
BtsIMutI CAGTG 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 2 cut(s) 259, 273
CviJI RGCY 3 cut(s) 15, 215, 241
CviKI_1 RGCY 3 cut(s) 15, 215, 241
CviQI GTAC 2 cut(s) 259, 273
DdeI CTNAG 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaiI YATR 3 cut(s) 69, 226, 230
FokI GGATG 2 cut(s) 102, 248
HphI GGTGA 1 cut(s) 259
Hpy188I TCNGA 3 cut(s) 30, 190, 222
Hpy188III TCNNGA 2 cut(s) 119, 197
HpyAV CCTTC 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 139
HpyF3I CTNAG 1 cut(s) 72
LpnPI CCDG 4 cut(s) 53, 132, 159, 241
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 60
MboII GAAGA 1 cut(s) 89
MluCI AATT 2 cut(s) 123, 251
MnlI CCTC 2 cut(s) 27, 67
MroXI GAANNNNTTC 2 cut(s) 35, 158
MseI TTAA 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 60
PdmI GAANNNNTTC 2 cut(s) 35, 158
PspPI GGNCC 1 cut(s) 112
RsaI GTAC 2 cut(s) 260, 274
RsaNI GTAC 2 cut(s) 259, 273
SaqAI TTAA 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 112
SetI ASST 2 cut(s) 52, 217
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 204
SgeI CNNG 6 cut(s) 52, 63, 131, 158, 209, 268
SinI GGWCC 1 cut(s) 112
Sse9I AATT 2 cut(s) 123, 251
StyI CCWWGG 1 cut(s) 50
TasI AATT 2 cut(s) 123, 251
TatI WGTACW 1 cut(s) 272
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 60
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 2 cut(s) 123, 151
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 1 cut(s) 251
XmnI GAANNNNTTC 2 cut(s) 35, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.