Rh1CG123900

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0019850
Physical Location & Seq
Forward (+)
27040361 .. 27041918
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG123900.1

Sequence Viewer

Length: 387 bp
ATGAGGATTGATGTTGTATCAAAGCCCTCATTTAAGTCAGAAGATTTCCAGTGCGAACCTTGGTTTGGGTCACTTTATACTGAGGAAGATGTATCTCCATCTTTGATAGATTTGTGGAAGGACCATCCAGAAATTGATGTTTCATTGCATCTCCCAGAAAAGAATGAGTTCATTCCTACTGATTTTTCCATTTGTTCTGATGGTCTTGATACTACAGATACAGCTTCTCCGAGATGTATATTGGATGAGCCATTGGAAGCAGAACGACTCAGAAGCATTCAGAAGGACGATGTCATGAACTGGTACAAAAACAAATTTGCAACAGTCATCTCCCAAGTGTCGGAGACTGATTTGCAATTCATGTTTGGGGATGCGAAACAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

128

Amino Acids

14.74

Weight (kDa)

4.3

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 1 - 84 2e-17 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019850)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0333071 RchiOBHm_Chr1g0334031
rosa_laevigata RLG00000029515
rosa_multiflora Rmu_sc0000026.1_g000011 Rmu_sc0002722.1_g000012
rosa_samantha Rh1AG130100 Rh1CG123900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 314
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 65, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 121
AvaII GGWCC 1 cut(s) 121
BccI CCATC 3 cut(s) 106, 132, 194
BcoDI GTCTC 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmsI GCATC 2 cut(s) 157, 361
BsaJI CCNNGG 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 340
Bse1I ACTGG 2 cut(s) 49, 305
Bse3DI GCAATG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 3 cut(s) 124, 250, 376
BseLI CCNNNNNNNGG 2 cut(s) 65, 340
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 72, 283
BseNI ACTGG 2 cut(s) 49, 305
BslI CCNNNNNNNGG 2 cut(s) 65, 340
BsmAI GTCTC 1 cut(s) 338
BsmI GAATGC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 73, 282
BspHI TCATGA 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 143
BsrI ACTGG 2 cut(s) 49, 305
BssECI CCNNGG 1 cut(s) 59
BssT1I CCWWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 81, 269
BstF5I GGATG 3 cut(s) 124, 250, 376
BstMAI GTCTC 1 cut(s) 338
BstSFI CTRYAG 1 cut(s) 213
BtsCI GGATG 3 cut(s) 124, 250, 376
BtsIMutI CAGTG 1 cut(s) 56
CciI TCATGA 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 304
CviAII CATG 2 cut(s) 295, 361
CviJI RGCY 3 cut(s) 25, 224, 250
CviKI_1 RGCY 3 cut(s) 25, 224, 250
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 2 cut(s) 81, 269
Eco130I CCWWGG 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 2 cut(s) 298, 364
FaiI YATR 4 cut(s) 78, 239, 296, 362
FatI CATG 2 cut(s) 294, 360
FokI GGATG 3 cut(s) 111, 257, 383
Hin1II CATG 2 cut(s) 298, 364
HinfI GANTC 1 cut(s) 267
Hpy188I TCNGA 6 cut(s) 40, 199, 231, 272, 282, 343
Hpy188III TCNNGA 3 cut(s) 128, 206, 295
HpyAV CCTTC 2 cut(s) 112, 277
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 148, 320, 355
HpyF3I CTNAG 2 cut(s) 81, 269
Hsp92II CATG 2 cut(s) 298, 364
LpnPI CCDG 4 cut(s) 62, 141, 168, 286
LweI GCATC 2 cut(s) 157, 361
MaeIII GTNAC 1 cut(s) 69
MboII GAAGA 2 cut(s) 53, 98
MluCI AATT 3 cut(s) 132, 314, 356
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 2 cut(s) 37, 76
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 276
NlaIII CATG 2 cut(s) 298, 364
NmuCI GTSAC 1 cut(s) 69
PagI TCATGA 1 cut(s) 294
PctI GAATGC 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 167
PflFI GACNNNGTC 1 cut(s) 290
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SaqAI TTAA 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 261
SetI ASST 2 cut(s) 61, 226
SfaNI GCATC 2 cut(s) 157, 361
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 121
Sse9I AATT 3 cut(s) 132, 314, 356
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 325
TasI AATT 3 cut(s) 132, 314, 356
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 56
TseFI GTSAC 1 cut(s) 69
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 4 cut(s) 132, 160, 311, 349
TspRI CASTG 1 cut(s) 56
Tth111I GACNNNGTC 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.