RchiOBHm_Chr1g0334111

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019352
Physical Location & Seq
Reverse (-)
26261196 .. 26262440
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56287

Sequence Viewer

Length: 495 bp
ATGCAAATAAGGCTGAGCTTCTATGTATTGATTTTTTTTTTCCACCCTTTTTTGCTAAGAGTACATGGAATAAATCATGAATTCAATTATTTTACACTTATTACACTAGGATATGGAGTACGTTTCAAGGGCACGCTAGACAAGGTGCGCAAGTGGAGGGATGCTTTAATCAAAGCTTCCAAAATAGCTGGGTTTGTTTCACGCAACATTGGCCCCGATTACAAATTAGTTGAGGAAGTTGTGAGAGATATTGTGTGGAAGTTGAGCCGCAAATGCATTGCCCCACAAGATGTCGGAGAAGATGTCTGCTTCAAGTGTGGTGGTATAGGACATTGGGCCCAACACTGCCCTTCAGCAGGTGAATGTTTCAAGTGTGGTGGGATAGGACATTGGGCTCAACATTGCCCTTCAGCTGGTGAATGTTTCAAGTGTGGCGGTTTAGGACATTGGGCCCAACACTGCCCTTCACGCTTTAACAGTGATGAAGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

164

Amino Acids

18.61

Weight (kDa)

8.7

Isoelectric Point (pI)

25.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019352)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0334111
rosa_roxburghii Rroxscaffold_4G00316170
rosa_samantha Rh1AG135200 Rh1AG136500 Rh1AG136700 Rh1BG110600 Rh1CG128900
rosa_wichuraiana Rw1G011360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 347
Acc16I TGCGCA 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 347
AciI CCGC 2 cut(s) 268, 435
AcsI RAATTY 1 cut(s) 80
AcuI CTGAAG 2 cut(s) 336, 393
AfaI GTAC 2 cut(s) 63, 120
AfiI CCNNNNNNNGG 2 cut(s) 356, 413
AflIII ACRYGT 1 cut(s) 489
AgsI TTSAA 5 cut(s) 85, 127, 313, 370, 427
AluBI AGCT 4 cut(s) 18, 176, 188, 413
AluI AGCT 4 cut(s) 18, 176, 188, 413
AoxI GGCC 3 cut(s) 211, 336, 450
ApaI GGGCCC 2 cut(s) 340, 454
ApoI RAATTY 1 cut(s) 80
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 5 cut(s) 212, 336, 337, 450, 451
AsuHPI GGTGA 2 cut(s) 371, 428
BaeGI GKGCMC 3 cut(s) 134, 340, 454
BanII GRGCYC 3 cut(s) 340, 397, 454
BfaI CTAG 2 cut(s) 107, 137
BfuAI ACCTGC 1 cut(s) 347
BisI GCNGC 1 cut(s) 268
BlpI GCTNAGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 269
BmgT120I GGNCC 5 cut(s) 212, 336, 337, 450, 451
BmiI GGNNCC 3 cut(s) 214, 338, 452
BmsI GCATC 1 cut(s) 151
Bpu1102I GCTNAGC 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 413
Bse3DI GCAATG 2 cut(s) 276, 400
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 2 cut(s) 356, 413
BseMI GCAATG 2 cut(s) 276, 400
BseMII CTCAG 1 cut(s) 5
BseSI GKGCMC 3 cut(s) 134, 340, 454
BseYI CCCAGC 1 cut(s) 188
BshFI GGCC 3 cut(s) 213, 338, 452
BslI CCNNNNNNNGG 2 cut(s) 356, 413
BsnI GGCC 3 cut(s) 213, 338, 452
Bsp120I GGGCCC 2 cut(s) 336, 450
Bsp1286I GDGCHC 4 cut(s) 134, 340, 397, 454
Bsp1720I GCTNAGC 1 cut(s) 14
BspACI CCGC 2 cut(s) 268, 435
BspANI GGCC 3 cut(s) 213, 338, 452
BspCNI CTCAG 1 cut(s) 6
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 214, 338, 452
BspMI ACCTGC 1 cut(s) 347
BsrDI GCAATG 2 cut(s) 276, 400
Bst4CI ACNGT 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 14, 56
BstENI CCTNNNNNAGG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 150
BstMWI GCNNNNNNNGC 4 cut(s) 10, 210, 273, 468
BstNSI RCATGY 1 cut(s) 493
BstSLI GKGCMC 3 cut(s) 134, 340, 454
BsuRI GGCC 3 cut(s) 213, 338, 452
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 2 cut(s) 343, 457
BtsIMutI CAGTG 3 cut(s) 343, 457, 484
BveI ACCTGC 1 cut(s) 347
Cac8I GCNNGC 1 cut(s) 134
CciI TCATGA 1 cut(s) 76
CfoI GCGC 1 cut(s) 150
Cfr13I GGNCC 5 cut(s) 212, 336, 337, 450, 451
Csp6I GTAC 2 cut(s) 62, 119
CspCI CAANNNNNGTGG 4 cut(s) 301, 336, 358, 393
CviAII CATG 3 cut(s) 65, 77, 490
CviQI GTAC 2 cut(s) 62, 119
DdeI CTNAG 2 cut(s) 14, 56
Eco24I GRGCYC 3 cut(s) 340, 397, 454
Eco57I CTGAAG 2 cut(s) 336, 393
EcoNI CCTNNNNNAGG 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 80
EcoT22I ATGCAT 1 cut(s) 278
EcoT38I GRGCYC 3 cut(s) 340, 397, 454
FaeI CATG 3 cut(s) 68, 80, 493
FaiI YATR 6 cut(s) 24, 66, 78, 114, 326, 491
FatI CATG 3 cut(s) 64, 76, 489
Fnu4HI GCNGC 1 cut(s) 268
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 3 cut(s) 340, 397, 454
Fsp4HI GCNGC 1 cut(s) 268
FspBI CTAG 2 cut(s) 107, 137
FspI TGCGCA 1 cut(s) 149
GlaI GCGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 268
GsaI CCCAGC 1 cut(s) 192
HaeIII GGCC 3 cut(s) 213, 338, 452
HhaI GCGC 1 cut(s) 150
Hin1II CATG 3 cut(s) 68, 80, 493
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 174
HphI GGTGA 2 cut(s) 371, 428
Hpy188I TCNGA 1 cut(s) 296
Hpy188III TCNNGA 1 cut(s) 77
HpyAV CCTTC 3 cut(s) 360, 417, 474
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 4, 276
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 210, 273, 468
HpyF3I CTNAG 2 cut(s) 14, 56
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 3 cut(s) 68, 80, 493
HspAI GCGC 1 cut(s) 148
LpnPI CCDG 3 cut(s) 174, 342, 399
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 107, 137
MaeII ACGT 1 cut(s) 121
MboII GAAGA 1 cut(s) 311
MhlI GDGCHC 4 cut(s) 134, 340, 397, 454
MluCI AATT 3 cut(s) 80, 85, 224
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 2 cut(s) 150, 226
Mph1103I ATGCAT 1 cut(s) 278
MseI TTAA 2 cut(s) 167, 474
MspA1I CMGCKG 1 cut(s) 413
MwoI GCNNNNNNNGC 4 cut(s) 10, 210, 273, 468
NlaIII CATG 3 cut(s) 68, 80, 493
NlaIV GGNNCC 3 cut(s) 214, 338, 452
NsbI TGCGCA 1 cut(s) 149
NsiI ATGCAT 1 cut(s) 278
NspI RCATGY 1 cut(s) 493
PagI TCATGA 1 cut(s) 76
PaqCI CACCTGC 1 cut(s) 347
PciI ACATGT 1 cut(s) 489
PkrI GCNGC 1 cut(s) 269
PscI ACATGT 1 cut(s) 489
PspFI CCCAGC 1 cut(s) 188
PspN4I GGNNCC 3 cut(s) 214, 338, 452
PspOMI GGGCCC 2 cut(s) 336, 450
PspPI GGNCC 5 cut(s) 212, 336, 337, 450, 451
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 2 cut(s) 63, 120
RsaNI GTAC 2 cut(s) 62, 119
SaqAI TTAA 2 cut(s) 167, 474
SatI GCNGC 1 cut(s) 268
Sau96I GGNCC 5 cut(s) 212, 336, 337, 450, 451
SduI GDGCHC 4 cut(s) 134, 340, 397, 454
SetI ASST 7 cut(s) 20, 124, 147, 178, 190, 361, 415
SfaNI GCATC 1 cut(s) 151
Sse9I AATT 3 cut(s) 80, 85, 224
SsiI CCGC 2 cut(s) 268, 435
SspMI CTAG 2 cut(s) 107, 137
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 1 cut(s) 124
TasI AATT 3 cut(s) 80, 85, 224
TatI WGTACW 1 cut(s) 61
TauI GCSGC 1 cut(s) 270
Tru1I TTAA 2 cut(s) 167, 474
Tru9I TTAA 2 cut(s) 167, 474
TscAI CASTG 3 cut(s) 350, 464, 484
TspDTI ATGAA 1 cut(s) 93
TspRI CASTG 3 cut(s) 350, 464, 484
XagI CCTNNNNNAGG 1 cut(s) 354
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 493
XspI CTAG 2 cut(s) 107, 137
Zsp2I ATGCAT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.