Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0019352

Physical Location & Seq

Genomic Coordinates Reverse (-)

28373769 .. 28380393

Gene Structure 6625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG128900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGACTATGTTGGCATTGTCAAGTGGCTAGAAGATAAGAGTGATGGAAAATTGGATGAAGAATTCAGTGGTTATGAGGCTGCAGCAATGATTTGGGTGGCAGCAGAGTTACTGACATTATGTGTGGACTGTGGAAGCAGTCGCGGACTGATAGGAGAGTGGGAATTCAGGAGTAAGGACAATTATCAAGGACTGGACTCATTTTCTGCTTCTATAAAGGTCACAAGAAAGAACACCCGAAGGGAAAAGGACGAGGGGTGGCGACAGAGAGAGATAGAATCAGTACAATCTCACTGTATTCTCTCCTCCACTCTGCTTGATCTGTCTTGTTTCACAGGGGATTTTCGCTCCAAGAAAGAGTTTGCCACTGGGTTTGTTTCACGCAACATTGGCCCCGATTACAAATTAGTTGAGGAAGTTGTGAGAGATATTGTGTGGAAGTTGAACCGCATATGCATTGCCCCACAAGATGTCGGAGAAGATGTCTGCTTCAAGTGTGGTGGTATAGGACATTGGGCCCAACACTGCCCTTCAGCAGGTGAATGTTTCAAGTGTGGTGGGATAGGACATTGGGCTCAACATTGCCCTTCAGCTGGTGAATGTTTCAAGTGTGGCGGTTTAGGACATTGGGCCCAACACTGCCCTTCACGCTTTAGCAGTGATGAAGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

224

Amino Acids

25.07

Weight (kDa)

5.4

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019352)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334111
rosa_roxburghii	Rroxscaffold_4G00316170
rosa_samantha	Rh1AG135200 Rh1AG136500 Rh1AG136700 Rh1BG110600 Rh1CG128900
rosa_wichuraiana	Rw1G011360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	527
Acc36I	ACCTGC	1 cut(s)	527
AccII	CGCG	1 cut(s)	144
AciI	CCGC	3 cut(s)	144, 448, 615
AcsI	RAATTY	2 cut(s)	62, 164
AcuI	CTGAAG	2 cut(s)	516, 573
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	536, 593
AflIII	ACRYGT	1 cut(s)	669
AgsI	TTSAA	4 cut(s)	445, 493, 550, 607
AluBI	AGCT	1 cut(s)	593
AluI	AGCT	1 cut(s)	593
AoxI	GGCC	3 cut(s)	391, 516, 630
ApaI	GGGCCC	2 cut(s)	520, 634
ApeKI	GCWGC	3 cut(s)	80, 83, 101
ApoI	RAATTY	2 cut(s)	62, 164
AspS9I	GGNCC	5 cut(s)	392, 516, 517, 630, 631
AsuHPI	GGTGA	2 cut(s)	551, 608
BaeGI	GKGCMC	2 cut(s)	520, 634
BanII	GRGCYC	3 cut(s)	520, 577, 634
BbvI	GCAGC	3 cut(s)	67, 95, 113
BccI	CCATC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	527
BisI	GCNGC	3 cut(s)	81, 84, 102
BlsI	GCNGC	3 cut(s)	82, 85, 103
BmgT120I	GGNCC	5 cut(s)	392, 516, 517, 630, 631
BmiI	GGNNCC	3 cut(s)	394, 518, 632
BmrI	ACTGGG	1 cut(s)	378
BmuI	ACTGGG	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 593
Bse1I	ACTGG	2 cut(s)	198, 373
Bse3DI	GCAATG	3 cut(s)	93, 456, 580
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	536, 593
BseMI	GCAATG	3 cut(s)	93, 456, 580
BseNI	ACTGG	2 cut(s)	198, 373
BseRI	GAGGAG	1 cut(s)	295
BseSI	GKGCMC	2 cut(s)	520, 634
BseXI	GCAGC	3 cut(s)	67, 95, 113
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	393, 518, 632
BslI	CCNNNNNNNGG	2 cut(s)	536, 593
BsnI	GGCC	3 cut(s)	393, 518, 632
Bsp120I	GGGCCC	2 cut(s)	516, 630
Bsp1286I	GDGCHC	3 cut(s)	520, 577, 634
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	3 cut(s)	144, 448, 615
BspANI	GGCC	3 cut(s)	393, 518, 632
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	3 cut(s)	394, 518, 632
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	527
BsrDI	GCAATG	3 cut(s)	93, 456, 580
BsrI	ACTGG	2 cut(s)	198, 373
BssMI	GATC	1 cut(s)	319
Bst4CI	ACNGT	2 cut(s)	131, 296
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 648
BstNSI	RCATGY	1 cut(s)	673
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	2 cut(s)	520, 634
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	67, 95, 113
BsuRI	GGCC	3 cut(s)	393, 518, 632
BtsCI	GGATG	1 cut(s)	61
BtsI	GCAGTG	3 cut(s)	523, 637, 664
BtsIMutI	CAGTG	6 cut(s)	73, 292, 366, 523, 637, 664
BveI	ACCTGC	1 cut(s)	527
Cfr13I	GGNCC	5 cut(s)	392, 516, 517, 630, 631
Csp6I	GTAC	1 cut(s)	284
CspCI	CAANNNNNGTGG	8 cut(s)	298, 333, 355, 390, 481, 516, 538, 573
CviAII	CATG	1 cut(s)	670
CviJI	RGCY	7 cut(s)	28, 80, 393, 518, 575, 593, 632
CviKI_1	RGCY	7 cut(s)	28, 80, 393, 518, 575, 593, 632
CviQI	GTAC	1 cut(s)	284
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Eco24I	GRGCYC	3 cut(s)	520, 577, 634
Eco57I	CTGAAG	2 cut(s)	516, 573
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRI	GAATTC	2 cut(s)	62, 164
EcoT22I	ATGCAT	1 cut(s)	458
EcoT38I	GRGCYC	3 cut(s)	520, 577, 634
FaeI	CATG	1 cut(s)	673
FaiI	YATR	8 cut(s)	9, 75, 121, 215, 452, 454, 506, 671
FatI	CATG	1 cut(s)	669
FauNDI	CATATG	1 cut(s)	452
Fnu4HI	GCNGC	3 cut(s)	81, 84, 102
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	3 cut(s)	520, 577, 634
Fsp4HI	GCNGC	3 cut(s)	81, 84, 102
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	3 cut(s)	81, 84, 102
HaeIII	GGCC	3 cut(s)	393, 518, 632
Hin1II	CATG	1 cut(s)	673
HinfI	GANTC	2 cut(s)	197, 278
HphI	GGTGA	2 cut(s)	551, 608
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	476
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	4 cut(s)	234, 540, 597, 654
HpyCH4III	ACNGT	2 cut(s)	131, 296
HpyCH4V	TGCA	2 cut(s)	83, 456
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 648
Hsp92II	CATG	1 cut(s)	673
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	6 cut(s)	154, 179, 321, 354, 522, 579
Lsp1109I	GCAGC	3 cut(s)	67, 95, 113
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	108, 220
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	3 cut(s)	44, 71, 491
MhlI	GDGCHC	3 cut(s)	520, 577, 634
MluCI	AATT	5 cut(s)	50, 62, 164, 181, 404
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	4 cut(s)	70, 247, 316, 406
Mph1103I	ATGCAT	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	593
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	390, 648
NdeI	CATATG	1 cut(s)	452
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	1 cut(s)	673
NlaIV	GGNNCC	3 cut(s)	394, 518, 632
NmuCI	GTSAC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	458
NspI	RCATGY	1 cut(s)	673
PaqCI	CACCTGC	1 cut(s)	527
PciI	ACATGT	1 cut(s)	669
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	82, 85, 103
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PscI	ACATGT	1 cut(s)	669
PspN4I	GGNNCC	3 cut(s)	394, 518, 632
PspOMI	GGGCCC	2 cut(s)	516, 630
PspPI	GGNCC	5 cut(s)	392, 516, 517, 630, 631
PstI	CTGCAG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SatI	GCNGC	3 cut(s)	81, 84, 102
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	5 cut(s)	392, 516, 517, 630, 631
SchI	GAGTC	1 cut(s)	191
SduI	GDGCHC	3 cut(s)	520, 577, 634
SetI	ASST	3 cut(s)	222, 541, 595
SfcI	CTRYAG	1 cut(s)	81
Sse9I	AATT	5 cut(s)	50, 62, 164, 181, 404
SsiI	CCGC	3 cut(s)	144, 448, 615
SspMI	CTAG	1 cut(s)	29
TaaI	ACNGT	2 cut(s)	131, 296
TasI	AATT	5 cut(s)	50, 62, 164, 181, 404
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	278
TscAI	CASTG	6 cut(s)	73, 299, 373, 530, 644, 664
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	3 cut(s)	80, 83, 101
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	72
TspRI	CASTG	6 cut(s)	73, 299, 373, 530, 644, 664
XagI	CCTNNNNNAGG	1 cut(s)	534
XapI	RAATTY	2 cut(s)	62, 164
XceI	RCATGY	1 cut(s)	673
XspI	CTAG	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.