Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0019352

Physical Location & Seq

Genomic Coordinates Reverse (-)

25871147 .. 25873243

Gene Structure 2097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG136500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTGCCCTGGTCCTAGCGGTATAGAGTATAGATCAGTACAATCTCACTGTATTCTCTCCTCCACTCTGCTTGATCTGTCTTGTTTCACAGGGGATTTTCGCTCCAAGAAAGAGTTTGCCACTGGGTTTGTTTCACGCAACATTGGCCCCGATTACAAATTAGTTGAGGAAGTTGTGAGAGATATTGTGTGGAAGTTGAACCGCATATGCATTGCCCCACAAGATGTCGGAGAAGATGTCTGCTTCAAGTGTGGTGGTATAGGACATTGGGCCCAACACTGCCCTTCAGCAGGTGAATGTTTCAAGTGTGGTGGGATAGGACATTGGGCTCAACATTGCCCTTCAGCTGGTGAATGTTTCAAGTGTGGCGGTTTAGGACATTGGGCCCAACACTGCCCTTCACGCTTTAGCAGTGATGAAGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

142

Amino Acids

15.56

Weight (kDa)

6.13

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019352)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334111
rosa_roxburghii	Rroxscaffold_4G00316170
rosa_samantha	Rh1AG135200 Rh1AG136500 Rh1AG136700 Rh1BG110600 Rh1CG128900
rosa_wichuraiana	Rw1G011360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	281
AciI	CCGC	3 cut(s)	18, 202, 369
AcuI	CTGAAG	2 cut(s)	270, 327
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	290, 347
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	4 cut(s)	199, 247, 304, 361
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
AoxI	GGCC	3 cut(s)	145, 270, 384
ApaI	GGGCCC	2 cut(s)	274, 388
AspS9I	GGNCC	6 cut(s)	11, 146, 270, 271, 384, 385
AsuHPI	GGTGA	2 cut(s)	305, 362
AvaII	GGWCC	1 cut(s)	11
BaeGI	GKGCMC	3 cut(s)	8, 274, 388
BanII	GRGCYC	3 cut(s)	274, 331, 388
BciT130I	CCWGG	1 cut(s)	9
BfaI	CTAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	281
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	6 cut(s)	11, 146, 270, 271, 384, 385
BmiI	GGNNCC	3 cut(s)	148, 272, 386
BmrFI	CCNGG	1 cut(s)	9
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 347
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	2 cut(s)	210, 334
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	7
BseLI	CCNNNNNNNGG	2 cut(s)	290, 347
BseMI	GCAATG	2 cut(s)	210, 334
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	49
BseSI	GKGCMC	3 cut(s)	8, 274, 388
BshFI	GGCC	3 cut(s)	147, 272, 386
BslI	CCNNNNNNNGG	2 cut(s)	290, 347
BsnI	GGCC	3 cut(s)	147, 272, 386
Bsp120I	GGGCCC	2 cut(s)	270, 384
Bsp1286I	GDGCHC	4 cut(s)	8, 274, 331, 388
Bsp143I	GATC	2 cut(s)	32, 73
BspACI	CCGC	3 cut(s)	18, 202, 369
BspANI	GGCC	3 cut(s)	147, 272, 386
BspLI	GGNNCC	3 cut(s)	148, 272, 386
BspMI	ACCTGC	1 cut(s)	281
BsrDI	GCAATG	2 cut(s)	210, 334
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	2 cut(s)	32, 73
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	50
BstENI	CCTNNNNNAGG	1 cut(s)	288
BstKTI	GATC	2 cut(s)	35, 76
BstMBI	GATC	2 cut(s)	32, 73
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 402
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	1 cut(s)	7
BstSLI	GKGCMC	3 cut(s)	8, 274, 388
BsuRI	GGCC	3 cut(s)	147, 272, 386
BtsI	GCAGTG	3 cut(s)	277, 391, 418
BtsIMutI	CAGTG	5 cut(s)	46, 120, 277, 391, 418
BveI	ACCTGC	1 cut(s)	281
Cfr13I	GGNCC	6 cut(s)	11, 146, 270, 271, 384, 385
Csp6I	GTAC	1 cut(s)	38
CspCI	CAANNNNNGTGG	8 cut(s)	52, 87, 109, 144, 235, 270, 292, 327
CviAII	CATG	1 cut(s)	424
CviJI	RGCY	5 cut(s)	147, 272, 329, 347, 386
CviKI_1	RGCY	5 cut(s)	147, 272, 329, 347, 386
CviQI	GTAC	1 cut(s)	38
DpnI	GATC	2 cut(s)	34, 75
DpnII	GATC	2 cut(s)	32, 73
Eco24I	GRGCYC	3 cut(s)	274, 331, 388
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	270, 327
EcoNI	CCTNNNNNAGG	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	7
EcoT22I	ATGCAT	1 cut(s)	212
EcoT38I	GRGCYC	3 cut(s)	274, 331, 388
FaeI	CATG	1 cut(s)	427
FaiI	YATR	6 cut(s)	23, 30, 206, 208, 260, 425
FatI	CATG	1 cut(s)	423
FauNDI	CATATG	1 cut(s)	206
FriOI	GRGCYC	3 cut(s)	274, 331, 388
FspBI	CTAG	1 cut(s)	15
HaeIII	GGCC	3 cut(s)	147, 272, 386
Hin1II	CATG	1 cut(s)	427
HphI	GGTGA	2 cut(s)	305, 362
Hpy188I	TCNGA	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	294, 351, 408
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 402
Hsp92II	CATG	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	32, 73
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	5 cut(s)	21, 75, 108, 276, 333
MaeI	CTAG	1 cut(s)	15
MalI	GATC	2 cut(s)	34, 75
MboI	GATC	2 cut(s)	32, 73
MboII	GAAGA	1 cut(s)	245
MhlI	GDGCHC	4 cut(s)	8, 274, 331, 388
MluCI	AATT	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	2 cut(s)	70, 160
Mph1103I	ATGCAT	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	144, 402
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	2 cut(s)	32, 73
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	3 cut(s)	148, 272, 386
NsiI	ATGCAT	1 cut(s)	212
NspI	RCATGY	1 cut(s)	427
PaqCI	CACCTGC	1 cut(s)	281
PciI	ACATGT	1 cut(s)	423
PscI	ACATGT	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	3 cut(s)	148, 272, 386
PspOMI	GGGCCC	2 cut(s)	270, 384
PspPI	GGNCC	6 cut(s)	11, 146, 270, 271, 384, 385
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
Sau3AI	GATC	2 cut(s)	32, 73
Sau96I	GGNCC	6 cut(s)	11, 146, 270, 271, 384, 385
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	4 cut(s)	8, 274, 331, 388
SetI	ASST	2 cut(s)	295, 349
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	1 cut(s)	158
SsiI	CCGC	3 cut(s)	18, 202, 369
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	50
TasI	AATT	1 cut(s)	158
TatI	WGTACW	1 cut(s)	37
TscAI	CASTG	5 cut(s)	53, 127, 284, 398, 418
TspRI	CASTG	5 cut(s)	53, 127, 284, 398, 418
VpaK11BI	GGWCC	1 cut(s)	11
XagI	CCTNNNNNAGG	1 cut(s)	288
XceI	RCATGY	1 cut(s)	427
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.