RchiOBHm_Chr1g0352881

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0021298
Physical Location & Seq
Reverse (-)
46239750 .. 46240700
951 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57853

Sequence Viewer

Length: 951 bp
ATGAGCTCACTTAAATATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGGAAACATGAGATCACTTGAAAATATGTACCTCTATTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTGAAAATCTGTACCTCTATTCCAATCAATTAAGTGGTTTGATTCCTGATGCTTTTGCAAACATGAGCTCACTTGCAGGGCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGGAAACATGAGATCACTTGAAAATCTGTACCTCTATTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTCAATATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATTCTTTTGCAAACATGAGATCACTTGAAAATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGGAAACATGAGATCACTTGAAAATCTGTACCTCTATTCCAACCAATTAAGTGGTTTGACTCCCGATGCTTTCACAAACATGAGCTCACTTGAAAATCTGTACCTCTATTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTCGCAAACATGAGCTCACTTGAATATCTTTTCCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTTATGCTTTCGCAAACATGAGCTCACTTGAAAATCTGTACCTCTATTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTCGCAAACATGAGCTCACTTGAATATCTTTTCCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTTATGCTTTCACAAACATGAGCTCACTTTTACATCTTGACCTCTCTTCCAACCAATTAACTGGTTTGGTTCCGAATGCTTTCGCAAACATGAGCTCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

34.56

Weight (kDa)

4.05

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 3 - 62 1.5e-14 Leucine rich repeat
LRR_14 PF23598 3 - 106 2e-06 Leucine-rich repeat region
LRR_5 PF13306 4 - 123 3.3e-07 BspA type Leucine rich repeat region (6 copies)
LRR_8 PF13855 50 - 110 3.5e-14 Leucine rich repeat
LRR_8 PF13855 78 - 134 4.8e-15 Leucine rich repeat
LRR_8 PF13855 98 - 158 1.2e-16 Leucine rich repeat
LRR_5 PF13306 116 - 228 1.4e-09 BspA type Leucine rich repeat region (6 copies)
LRR_14 PF23598 119 - 203 1.1e-07 Leucine-rich repeat region
LRR_4 PF12799 123 - 161 8.3e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 131 - 182 4.5e-11 Leucine rich repeat
LRR_8 PF13855 147 - 206 1e-13 Leucine rich repeat
LRR_8 PF13855 170 - 230 4.7e-16 Leucine rich repeat
LRR_5 PF13306 212 - 315 2.6e-09 BspA type Leucine rich repeat region (6 copies)
LRR_8 PF13855 225 - 278 1.1e-12 Leucine rich repeat
LRR_8 PF13855 275 - 316 1.3e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021298)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0352881
rosa_samantha Rh1AG255900 Rh1AG256600 Rh1CG239500 Rh1CG239900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 6 cut(s) 95, 167, 311, 527, 599, 743
AluBI AGCT 9 cut(s) 6, 222, 366, 582, 654, 726, 798, 870, 942
AluI AGCT 9 cut(s) 6, 222, 366, 582, 654, 726, 798, 870, 942
Alw21I GWGCWC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
Asp700I GAANNNNTTC 1 cut(s) 926
BanII GRGCYC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
Bbv12I GWGCWC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
BcgI CGANNNNNNTGC 6 cut(s) 119, 153, 335, 369, 407, 441
BmiI GGNNCC 1 cut(s) 918
BmsI GCATC 9 cut(s) 49, 121, 193, 265, 337, 481, 553, 625, 769
Bse1I ACTGG 1 cut(s) 913
BseNI ACTGG 1 cut(s) 913
BsiHKAI GWGCWC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
BsmI GAATGC 1 cut(s) 928
Bsp1286I GDGCHC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
Bsp143I GATC 5 cut(s) 77, 149, 293, 437, 509
BspLI GGNNCC 1 cut(s) 918
BsrI ACTGG 1 cut(s) 913
BssMI GATC 5 cut(s) 77, 149, 293, 437, 509
Bst6I CTCTTC 7 cut(s) 34, 250, 394, 466, 682, 826, 898
BstKTI GATC 5 cut(s) 80, 152, 296, 440, 512
BstMBI GATC 5 cut(s) 77, 149, 293, 437, 509
Csp6I GTAC 6 cut(s) 94, 166, 310, 526, 598, 742
CviQI GTAC 6 cut(s) 94, 166, 310, 526, 598, 742
DpnI GATC 5 cut(s) 79, 151, 295, 439, 511
DpnII GATC 5 cut(s) 77, 149, 293, 437, 509
Eam1104I CTCTTC 7 cut(s) 34, 250, 394, 466, 682, 826, 898
EarI CTCTTC 7 cut(s) 34, 250, 394, 466, 682, 826, 898
Ecl136II GAGCTC 9 cut(s) 6, 222, 366, 582, 654, 726, 798, 870, 942
Eco24I GRGCYC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
Eco53kI GAGCTC 9 cut(s) 6, 222, 366, 582, 654, 726, 798, 870, 942
EcoICRI GAGCTC 9 cut(s) 6, 222, 366, 582, 654, 726, 798, 870, 942
EcoT38I GRGCYC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
FriOI GRGCYC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
Hpy188I TCNGA 1 cut(s) 921
HpyCH4V TGCA 5 cut(s) 140, 212, 230, 356, 428
Kzo9I GATC 5 cut(s) 77, 149, 293, 437, 509
LpnPI CCDG 3 cut(s) 213, 216, 894
LweI GCATC 9 cut(s) 49, 121, 193, 265, 337, 481, 553, 625, 769
MalI GATC 5 cut(s) 79, 151, 295, 439, 511
MboI GATC 5 cut(s) 77, 149, 293, 437, 509
MboII GAAGA 7 cut(s) 21, 237, 381, 453, 669, 813, 885
MhlI GDGCHC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
MlyI GAGTC 1 cut(s) 550
MroXI GAANNNNTTC 1 cut(s) 926
MslI CAYNNNNRTG 2 cut(s) 575, 863
Mva1269I GAATGC 1 cut(s) 928
NdeII GATC 5 cut(s) 77, 149, 293, 437, 509
NlaIV GGNNCC 1 cut(s) 918
PctI GAATGC 1 cut(s) 928
PdmI GAANNNNTTC 1 cut(s) 926
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
Psp124BI GAGCTC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
PspN4I GGNNCC 1 cut(s) 918
RsaI GTAC 6 cut(s) 95, 167, 311, 527, 599, 743
RsaNI GTAC 6 cut(s) 94, 166, 310, 526, 598, 742
RseI CAYNNNNRTG 2 cut(s) 575, 863
SacI GAGCTC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
Sau3AI GATC 5 cut(s) 77, 149, 293, 437, 509
SchI GAGTC 1 cut(s) 550
SduI GDGCHC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
SfaNI GCATC 9 cut(s) 49, 121, 193, 265, 337, 481, 553, 625, 769
SmiMI CAYNNNNRTG 2 cut(s) 575, 863
SstI GAGCTC 9 cut(s) 8, 224, 368, 584, 656, 728, 800, 872, 944
XmnI GAANNNNTTC 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.