Rh1AG255900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0021298
Physical Location & Seq
Reverse (-)
47198156 .. 47201201
3046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG255900.1

Sequence Viewer

Length: 396 bp
ATGAGCTCACTTGTAACTCTTGACCTCTCTTTCAACCAAATAAGTGGGTTGATTCCTTATGCTTTTGCAAACATGAGATCACTTGAAAATTTGTACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTAAATATCTGTACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTTATGCTTTTGCAAACATGAGCTCACTTAAATATCTGTACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTAAATATCTATTTGTGATCCGGAAGGAAACGGTCGGCCAAATGTCTCGAGCAATGAAGAAGATCCAGATGAGCTCATCACGCTGGGTTTCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.71

Weight (kDa)

9.82

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 3 - 62 5.6e-17 Leucine rich repeat
LRR_4 PF12799 3 - 41 1.6e-06 Leucine Rich repeats (2 copies)
LRR_5 PF13306 13 - 105 5.3e-10 BspA type Leucine rich repeat region (6 copies)
LRR_4 PF12799 27 - 65 9.8e-07 Leucine Rich repeats (2 copies)
LRR_4 PF12799 51 - 89 3.8e-07 Leucine Rich repeats (2 copies)
LRR_8 PF13855 52 - 104 5.3e-15 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021298)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0352881
rosa_samantha Rh1AG255900 Rh1AG256600 Rh1CG239500 Rh1CG239900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 318
AclWI GGATC 2 cut(s) 310, 355
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 3 cut(s) 95, 167, 239
AgsI TTSAA 2 cut(s) 34, 86
AluBI AGCT 4 cut(s) 6, 150, 222, 372
AluI AGCT 4 cut(s) 6, 150, 222, 372
Alw21I GWGCWC 4 cut(s) 8, 152, 224, 374
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 2 cut(s) 310, 355
Ama87I CYCGRG 1 cut(s) 345
Aor13HI TCCGGA 1 cut(s) 318
AoxI GGCC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 345
BanII GRGCYC 4 cut(s) 8, 152, 224, 374
Bbv12I GWGCWC 4 cut(s) 8, 152, 224, 374
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BcoDI GTCTC 1 cut(s) 348
BmeT110I CYCGRG 1 cut(s) 345
BmsI GCATC 1 cut(s) 265
BsaWI WCCGGW 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 357
BseAI TCCGGA 1 cut(s) 318
BseMI GCAATG 1 cut(s) 357
BseYI CCCAGC 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 333
BshFI GGCC 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 333
BsiHKAI GWGCWC 4 cut(s) 8, 152, 224, 374
BsiHKCI CYCGRG 1 cut(s) 345
BsiSI CCGG 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 348
BsnI GGCC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 345
Bsp1286I GDGCHC 4 cut(s) 8, 152, 224, 374
Bsp13I TCCGGA 1 cut(s) 318
Bsp143I GATC 4 cut(s) 77, 293, 315, 360
BspANI GGCC 1 cut(s) 336
BspEI TCCGGA 1 cut(s) 318
BspPI GGATC 2 cut(s) 310, 355
BsrDI GCAATG 1 cut(s) 357
BssMI GATC 4 cut(s) 77, 293, 315, 360
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 3 cut(s) 106, 178, 250
BstKTI GATC 4 cut(s) 80, 296, 318, 363
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 4 cut(s) 77, 293, 315, 360
BstMCI CGRYCG 1 cut(s) 333
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 360
BstXI CCANNNNNNTGG 4 cut(s) 44, 116, 188, 260
BstYI RGATCY 1 cut(s) 360
BsuRI GGCC 1 cut(s) 336
Csp6I GTAC 3 cut(s) 94, 166, 238
CviAII CATG 4 cut(s) 73, 145, 217, 289
CviJI RGCY 5 cut(s) 6, 150, 222, 336, 372
CviKI_1 RGCY 5 cut(s) 6, 150, 222, 336, 372
CviQI GTAC 3 cut(s) 94, 166, 238
DpnI GATC 4 cut(s) 79, 295, 317, 362
DpnII GATC 4 cut(s) 77, 293, 315, 360
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 3 cut(s) 106, 178, 250
EarI CTCTTC 3 cut(s) 106, 178, 250
Ecl136II GAGCTC 4 cut(s) 6, 150, 222, 372
Eco24I GRGCYC 4 cut(s) 8, 152, 224, 374
Eco53kI GAGCTC 4 cut(s) 6, 150, 222, 372
Eco88I CYCGRG 1 cut(s) 345
EcoICRI GAGCTC 4 cut(s) 6, 150, 222, 372
EcoT38I GRGCYC 4 cut(s) 8, 152, 224, 374
FaeI CATG 4 cut(s) 76, 148, 220, 292
FaiI YATR 8 cut(s) 60, 74, 132, 146, 204, 218, 290, 394
FatI CATG 4 cut(s) 72, 144, 216, 288
FriOI GRGCYC 4 cut(s) 8, 152, 224, 374
GsaI CCCAGC 1 cut(s) 385
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 319
Hin1II CATG 4 cut(s) 76, 148, 220, 292
HinfI GANTC 4 cut(s) 52, 124, 196, 268
HpaII CCGG 1 cut(s) 319
Hpy188III TCNNGA 5 cut(s) 20, 272, 319, 345, 364
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 4 cut(s) 68, 140, 212, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
Hsp92II CATG 4 cut(s) 76, 148, 220, 292
Kpn2I TCCGGA 1 cut(s) 318
Kzo9I GATC 4 cut(s) 77, 293, 315, 360
LpnPI CCDG 3 cut(s) 332, 367, 377
LweI GCATC 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 13
MalI GATC 4 cut(s) 79, 295, 317, 362
MboI GATC 4 cut(s) 77, 293, 315, 360
MboII GAAGA 5 cut(s) 93, 165, 237, 367, 370
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 4 cut(s) 8, 152, 224, 374
MluCI AATT 4 cut(s) 88, 110, 182, 254
MmeI TCCRAC 3 cut(s) 129, 201, 273
MnlI CCTC 4 cut(s) 35, 107, 179, 251
MroI TCCGGA 1 cut(s) 318
MseI TTAA 6 cut(s) 113, 156, 185, 228, 257, 300
MspI CCGG 1 cut(s) 319
MwoI GCNNNNNNNGC 1 cut(s) 378
NdeII GATC 4 cut(s) 77, 293, 315, 360
NlaIII CATG 4 cut(s) 76, 148, 220, 292
PaeR7I CTCGAG 1 cut(s) 345
PfeI GAWTC 4 cut(s) 52, 124, 196, 268
Psp124BI GAGCTC 4 cut(s) 8, 152, 224, 374
PspFI CCCAGC 1 cut(s) 381
PsuI RGATCY 1 cut(s) 360
RsaI GTAC 3 cut(s) 95, 167, 239
RsaNI GTAC 3 cut(s) 94, 166, 238
SacI GAGCTC 4 cut(s) 8, 152, 224, 374
SaqAI TTAA 6 cut(s) 113, 156, 185, 228, 257, 300
Sau3AI GATC 4 cut(s) 77, 293, 315, 360
SduI GDGCHC 4 cut(s) 8, 152, 224, 374
SetI ASST 8 cut(s) 8, 27, 99, 152, 171, 224, 243, 374
SfaNI GCATC 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 345
SlaI CTCGAG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 4 cut(s) 88, 110, 182, 254
SstI GAGCTC 4 cut(s) 8, 152, 224, 374
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 1 cut(s) 346
TasI AATT 4 cut(s) 88, 110, 182, 254
TfiI GAWTC 4 cut(s) 52, 124, 196, 268
Tru1I TTAA 6 cut(s) 113, 156, 185, 228, 257, 300
Tru9I TTAA 6 cut(s) 113, 156, 185, 228, 257, 300
TspDTI ATGAA 1 cut(s) 368
XapI RAATTY 1 cut(s) 88
XhoI CTCGAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.