Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0021298

Physical Location & Seq

Genomic Coordinates Reverse (-)

49853901 .. 49855057

Gene Structure 1157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG239500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAGCTCACTTGCACGTCTTGACCTCTCTTTCAACCAATTAAGTGGTTTGACTCCCGATGCTTTCGCAAACATGAGCTCACTTGCATCTCTTAACCTCTCTTACAACCAATTAAGTGGTTTGATTCCCGATGCTTTCAGAAACACGGGCTCACTTACAAGTGTTGACCTCTCTTACATCTACCAATTAAGTGGTTTGACTCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGACTCCCGATGCTTTCAGAAACATGAGCTCACTTGCACGTCTTGACCTCTCTTTCAACCAATTAAGTGGTTTGACTCCCAATGCTTTTGCAAACATGAGCTCACTTGCAGAACTTGACATCTCTTATAACCCATTCAAAGGAGGGATCCCAACATTCATTGGCCAGTTATGCAGTTTGCGATATGTGTCAGTTTCAGGCTGTAATCTGACTAGTGGACAACTTTCTGAGTTTGTTCAAGGATGTTCGGCATGTGTTCAAAACTCATTACAGAGTTTTGAACTTTCCAATAATCATCTTGCTGGGTCATTTCCTAATCTTACAAGCTTTTCATCATTGGAGCTTGAGGTCTTGTATGGTGGGGCCGGATTTCCCAAAATGGCTTCGAACCCAAAAAGATCTTTCCTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

214

Amino Acids

22.82

Weight (kDa)

4.75

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	3 - 59	3.4e-14	Leucine rich repeat
LRR_8	PF13855	67 - 122	1.2e-15	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021298)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0352881
rosa_samantha	Rh1AG255900 Rh1AG256600 Rh1CG239500 Rh1CG239900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AclWI	GGATC	2 cut(s)	373, 386
AcoI	YGGCCR	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	6 cut(s)	34, 289, 370, 470, 491, 512
AhlI	ACTAGT	1 cut(s)	443
AjiI	CACGTC	2 cut(s)	17, 272
AluBI	AGCT	6 cut(s)	6, 78, 261, 333, 558, 574
AluI	AGCT	6 cut(s)	6, 78, 261, 333, 558, 574
Alw21I	GWGCWC	4 cut(s)	8, 80, 263, 335
AlwI	GGATC	2 cut(s)	373, 386
AoxI	GGCC	2 cut(s)	394, 594
AspS9I	GGNCC	1 cut(s)	594
AsuII	TTCGAA	1 cut(s)	617
BalI	TGGCCA	1 cut(s)	396
BamHI	GGATCC	1 cut(s)	378
BanII	GRGCYC	5 cut(s)	8, 80, 152, 263, 335
Bbv12I	GWGCWC	4 cut(s)	8, 80, 263, 335
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	1 cut(s)	444
BglII	AGATCT	1 cut(s)	629
BmgBI	CACGTC	2 cut(s)	17, 272
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	2 cut(s)	380, 595
BmsI	GCATC	4 cut(s)	49, 95, 121, 232
Bpu14I	TTCGAA	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	596
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	479
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	533
BshFI	GGCC	2 cut(s)	396, 596
BsiHKAI	GWGCWC	4 cut(s)	8, 80, 263, 335
BsiSI	CCGG	1 cut(s)	597
BslI	CCNNNNNNNGG	1 cut(s)	371
BsnI	GGCC	2 cut(s)	396, 596
Bsp119I	TTCGAA	1 cut(s)	617
Bsp1286I	GDGCHC	5 cut(s)	8, 80, 152, 263, 335
Bsp143I	GATC	2 cut(s)	378, 629
BspANI	GGCC	2 cut(s)	396, 596
BspCNI	CTCAG	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	380, 595
BspPI	GGATC	2 cut(s)	373, 386
BspT104I	TTCGAA	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	397
BssMI	GATC	2 cut(s)	378, 629
Bst6I	CTCTTC	1 cut(s)	217
BstBI	TTCGAA	1 cut(s)	617
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	479
BstKTI	GATC	2 cut(s)	381, 632
BstMBI	GATC	2 cut(s)	378, 629
BstMWI	GCNNNNNNNGC	1 cut(s)	402
BstNSI	RCATGY	1 cut(s)	486
BstX2I	RGATCY	2 cut(s)	378, 629
BstXI	CCANNNNNNTGG	5 cut(s)	44, 116, 191, 227, 299
BstYI	RGATCY	2 cut(s)	378, 629
BsuRI	GGCC	2 cut(s)	396, 596
BtrI	CACGTC	2 cut(s)	17, 272
BtsCI	GGATG	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	594
CviAII	CATG	4 cut(s)	73, 256, 328, 483
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	2 cut(s)	380, 631
DpnII	GATC	2 cut(s)	378, 629
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Ecl136II	GAGCTC	4 cut(s)	6, 78, 261, 333
Eco24I	GRGCYC	5 cut(s)	8, 80, 152, 263, 335
Eco53kI	GAGCTC	4 cut(s)	6, 78, 261, 333
EcoICRI	GAGCTC	4 cut(s)	6, 78, 261, 333
EcoT38I	GRGCYC	5 cut(s)	8, 80, 152, 263, 335
FaeI	CATG	4 cut(s)	76, 259, 331, 486
FaiI	YATR	8 cut(s)	74, 257, 329, 360, 403, 417, 484, 588
FatI	CATG	4 cut(s)	72, 255, 327, 482
FokI	GGATG	1 cut(s)	486
FriOI	GRGCYC	5 cut(s)	8, 80, 152, 263, 335
FspBI	CTAG	1 cut(s)	444
GsaI	CCCAGC	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	396, 596
HapII	CCGG	1 cut(s)	597
Hin1II	CATG	4 cut(s)	76, 259, 331, 486
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	5 cut(s)	52, 124, 199, 235, 307
HpaII	CCGG	1 cut(s)	597
Hpy166II	GTNNAC	2 cut(s)	166, 449
Hpy188I	TCNGA	4 cut(s)	140, 251, 441, 460
Hpy188III	TCNNGA	6 cut(s)	20, 56, 128, 203, 239, 275
Hpy8I	GTNNAC	2 cut(s)	166, 449
HpyCH4IV	ACGT	2 cut(s)	16, 271
HpyCH4V	TGCA	6 cut(s)	14, 86, 269, 323, 341, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	402
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	2 cut(s)	16, 271
Hsp92II	CATG	4 cut(s)	76, 259, 331, 486
Kzo9I	GATC	2 cut(s)	378, 629
LmnI	GCTCC	1 cut(s)	571
LpnPI	CCDG	4 cut(s)	410, 414, 519, 610
LweI	GCATC	4 cut(s)	49, 95, 121, 232
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	2 cut(s)	16, 271
MalI	GATC	2 cut(s)	380, 631
MboI	GATC	2 cut(s)	378, 629
MboII	GAAGA	1 cut(s)	204
MflI	RGATCY	2 cut(s)	378, 629
MhlI	GDGCHC	5 cut(s)	8, 80, 152, 263, 335
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	5 cut(s)	38, 110, 185, 221, 293
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	4 cut(s)	46, 193, 229, 301
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	7 cut(s)	35, 107, 179, 218, 290, 368, 571
Mox20I	TGGCCA	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	6 cut(s)	41, 93, 113, 188, 224, 296
Msp20I	TGGCCA	1 cut(s)	396
MspI	CCGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	1 cut(s)	402
NdeII	GATC	2 cut(s)	378, 629
NlaIII	CATG	4 cut(s)	76, 259, 331, 486
NlaIV	GGNNCC	2 cut(s)	380, 595
NspI	RCATGY	1 cut(s)	486
NspV	TTCGAA	1 cut(s)	617
PfeI	GAWTC	1 cut(s)	124
PleI	GAGTC	4 cut(s)	46, 193, 229, 301
PpsI	GAGTC	4 cut(s)	46, 193, 229, 301
PsiI	TTATAA	1 cut(s)	360
Psp124BI	GAGCTC	4 cut(s)	8, 80, 263, 335
PspFI	CCCAGC	1 cut(s)	533
PspN4I	GGNNCC	2 cut(s)	380, 595
PspPI	GGNCC	1 cut(s)	594
PsuI	RGATCY	2 cut(s)	378, 629
SacI	GAGCTC	4 cut(s)	8, 80, 263, 335
SaqAI	TTAA	6 cut(s)	41, 93, 113, 188, 224, 296
Sau3AI	GATC	2 cut(s)	378, 629
Sau96I	GGNCC	1 cut(s)	594
SchI	GAGTC	4 cut(s)	46, 193, 229, 301
SduI	GDGCHC	5 cut(s)	8, 80, 152, 263, 335
SfaNI	GCATC	4 cut(s)	49, 95, 121, 232
SfuI	TTCGAA	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SpeI	ACTAGT	1 cut(s)	443
Sse9I	AATT	5 cut(s)	38, 110, 185, 221, 293
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	4 cut(s)	8, 80, 263, 335
TaiI	ACGT	2 cut(s)	19, 274
TaqI	TCGA	1 cut(s)	617
TasI	AATT	5 cut(s)	38, 110, 185, 221, 293
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	6 cut(s)	41, 93, 113, 188, 224, 296
Tru9I	TTAA	6 cut(s)	41, 93, 113, 188, 224, 296
TspDTI	ATGAA	2 cut(s)	379, 552
XceI	RCATGY	1 cut(s)	486
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.