Rh1AG256600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0021298
Physical Location & Seq
Reverse (-)
47384575 .. 47388772
4198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG256600.1

Sequence Viewer

Length: 1524 bp
ATGAGCTCACTTGCATATCTTGACCTCTCTTTCAACCAATTAAGTGGTTTGAATCCCGATGTTTTCAGAAACATGAGCTCACTTGCATATCTTGACCTCTCTTTCAACCAATTAAGTGGTTTGAATCCCGATGTTTTTAGAAACATGGGCTCACTTGAACATCTATCCCTCTCTTCCAACCAATTTAGTGGTTTGATTCCCGATGCTTTCAGAAACACGGGCTCACTTGAATATCTTGACCTCTCTTCCAACCAATTTAGTGGTTTCATTCCCGATGTTTTCAGAAACATGGGCTCACTTGAACATCTATCCCTCTCTTCCAACCACTTTAGTGGTTTGATTTCGAATGCTTTCACAAACATGAGCTCACTTGCATATCTTGACCTCACTTCCAACCAATTTAGTGGTTTGATTCCCGATGTTTTCAGAAACATGGGCTCACTTGAACATCTATCCCTCTCTTCCAACCAATTTAGTGGCTTGATTTCGAATGCTTTCACAAACATGAGCTCACTTGCATATCTTGACCTCTCTTCTAACCAATTTAGTGGTTTGATTCCCGATGCTTTCAGAAACACAGGCTCACTTGAATATCTTGACCTCTCTTCCAATCAATTTAGTGGTTTGATTCCCGATGCTTTCAGAAACACGGGCTCACTTGAATATCTTGACCTCTCTTCCAATCAATTTAGTGGTTTGATTCCCGATGCTTTCAGAAACACGGGCTCACTTGAATATCTTGACCTCTCTTCCAACCAATTTAGTGGTTTGATTCCTGATGGTTTCAGAAACACGAGCTCACTTGAATATATATCCCTCTCTTCCAACCAATTTAGCGGTTTGACTTCGAATGCTTTCACAAACATGAGCTCACTTGCAGATCTTGACCTCTCTTTCAACCAATTTAGTGGTTTGATTCCCGATGTTTTCAGAAACATGGGCTCACTTGAACATCTATCCCTCTTTTCCAACCAATTTAGTGGTTTGATTTCGAATGCTTTCACAAACATGAGCTCACTTGCATATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTCAGAAACACAGGCTCACTTGAATATCTTGACCTCTCTTCCAACCAATTTAGTGGTTTGACTCCCGATGCTTTCGCAAACATGGGCTCACTTGCAAGTCTGTACCTCTATTCCAACCAATTAAGTGGTTGGACTCCCGATGCTTTCGCAAACATGAGCTCACTTGAATATCATGACCTCTCTTCCAACCAATTAAGTGGTTTGACTCCCGATGCTTTCAGAAACATGAGCTCACTTGCAGATCTTGACCTCTCTTCCAACCAATTTAGTGGTTTGATTCCCGATGTTTTCAGAAACATGGGCTCACTTGCAAGTCTTGACCTCTCTTTCAACCAATTTAGTTGTTTGACTCCTGATACTTTCGCAAACATGAGCCTACTTGCAAGTCTTGACCTCTCTTTCAACCAATTTAGTGAGCCAGCATCTTCTGAAACTGTGCTTCCTTTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

507

Amino Acids

55.22

Weight (kDa)

4.05

Isoelectric Point (pI)

20.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 3 - 62 1.6e-16 Leucine rich repeat
LRR_5 PF13306 19 - 132 3.4e-07 BspA type Leucine rich repeat region (6 copies)
LRR_8 PF13855 55 - 110 1.8e-12 Leucine rich repeat
LRR_5 PF13306 92 - 219 7.3e-09 BspA type Leucine rich repeat region (6 copies)
LRR_8 PF13855 105 - 158 6.6e-11 Leucine rich repeat
LRR_8 PF13855 153 - 206 1.2e-11 Leucine rich repeat
LRR_8 PF13855 195 - 254 1.5e-14 Leucine rich repeat
LRR_5 PF13306 212 - 340 2e-08 BspA type Leucine rich repeat region (6 copies)
LRR_8 PF13855 219 - 278 4.2e-13 Leucine rich repeat
LRR_8 PF13855 243 - 302 1.5e-11 Leucine rich repeat
LRR_8 PF13855 267 - 326 9.3e-12 Leucine rich repeat
LRR_8 PF13855 295 - 350 2.6e-10 Leucine rich repeat
LRR_5 PF13306 308 - 435 9.1e-10 BspA type Leucine rich repeat region (6 copies)
LRR_8 PF13855 323 - 374 2.8e-11 Leucine rich repeat
LRR_8 PF13855 339 - 398 1.4e-14 Leucine rich repeat
LRR_8 PF13855 363 - 422 5.2e-13 Leucine rich repeat
LRR_8 PF13855 387 - 446 3.3e-13 Leucine rich repeat
LRR_8 PF13855 416 - 470 6.9e-13 Leucine rich repeat
LRR_8 PF13855 439 - 494 5.6e-11 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021298)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0352881
rosa_samantha Rh1AG255900 Rh1AG256600 Rh1CG239500 Rh1CG239900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 837
AfaI GTAC 1 cut(s) 1175
AleI CACNNNNGTG 1 cut(s) 330
AluBI AGCT 9 cut(s) 6, 78, 366, 510, 798, 870, 1014, 1230, 1302
AluI AGCT 9 cut(s) 6, 78, 366, 510, 798, 870, 1014, 1230, 1302
Alw21I GWGCWC 9 cut(s) 8, 80, 368, 512, 800, 872, 1016, 1232, 1304
Asp700I GAANNNNTTC 4 cut(s) 350, 494, 854, 998
AsuII TTCGAA 4 cut(s) 344, 488, 848, 992
BauI CACGAG 1 cut(s) 793
Bbv12I GWGCWC 9 cut(s) 8, 80, 368, 512, 800, 872, 1016, 1232, 1304
BccI CCATC 1 cut(s) 773
BglII AGATCT 2 cut(s) 880, 1312
BmsI GCATC 9 cut(s) 193, 553, 625, 697, 1057, 1129, 1201, 1273, 1502
Bpu14I TTCGAA 4 cut(s) 344, 488, 848, 992
BsiHKAI GWGCWC 9 cut(s) 8, 80, 368, 512, 800, 872, 1016, 1232, 1304
BsmI GAATGC 4 cut(s) 352, 496, 856, 1000
Bsp119I TTCGAA 4 cut(s) 344, 488, 848, 992
Bsp143I GATC 2 cut(s) 880, 1312
BspACI CCGC 1 cut(s) 837
BspHI TCATGA 1 cut(s) 1243
BspT104I TTCGAA 4 cut(s) 344, 488, 848, 992
BssMI GATC 2 cut(s) 880, 1312
BssSI CACGAG 1 cut(s) 793
Bst2BI CACGAG 1 cut(s) 793
Bst4CI ACNGT 1 cut(s) 1507
BstBI TTCGAA 4 cut(s) 344, 488, 848, 992
BstC8I GCNNGC 1 cut(s) 1491
BstKTI GATC 2 cut(s) 883, 1315
BstMBI GATC 2 cut(s) 880, 1312
BstX2I RGATCY 2 cut(s) 880, 1312
BstYI RGATCY 2 cut(s) 880, 1312
Cac8I GCNNGC 1 cut(s) 1491
CciI TCATGA 1 cut(s) 1243
Csp6I GTAC 1 cut(s) 1174
CviQI GTAC 1 cut(s) 1174
DpnI GATC 2 cut(s) 882, 1314
DpnII GATC 2 cut(s) 880, 1312
Ecl136II GAGCTC 9 cut(s) 6, 78, 366, 510, 798, 870, 1014, 1230, 1302
Eco53kI GAGCTC 9 cut(s) 6, 78, 366, 510, 798, 870, 1014, 1230, 1302
EcoICRI GAGCTC 9 cut(s) 6, 78, 366, 510, 798, 870, 1014, 1230, 1302
HpyCH4III ACNGT 1 cut(s) 1507
Kzo9I GATC 2 cut(s) 880, 1312
LpnPI CCDG 5 cut(s) 564, 789, 1068, 1437, 1503
LweI GCATC 9 cut(s) 193, 553, 625, 697, 1057, 1129, 1201, 1273, 1502
MalI GATC 2 cut(s) 882, 1314
MboI GATC 2 cut(s) 880, 1312
MfeI CAATTG 1 cut(s) 1519
MflI RGATCY 2 cut(s) 880, 1312
MlyI GAGTC 4 cut(s) 1126, 1198, 1270, 1414
MroXI GAANNNNTTC 4 cut(s) 350, 494, 854, 998
MseI TTAA 5 cut(s) 41, 113, 1049, 1193, 1265
MslI CAYNNNNRTG 5 cut(s) 330, 359, 503, 863, 1007
MunI CAATTG 1 cut(s) 1519
Mva1269I GAATGC 4 cut(s) 352, 496, 856, 1000
NdeII GATC 2 cut(s) 880, 1312
NspV TTCGAA 4 cut(s) 344, 488, 848, 992
OliI CACNNNNGTG 1 cut(s) 330
PagI TCATGA 1 cut(s) 1243
PctI GAATGC 4 cut(s) 352, 496, 856, 1000
PdmI GAANNNNTTC 4 cut(s) 350, 494, 854, 998
PleI GAGTC 4 cut(s) 1126, 1198, 1270, 1414
PpsI GAGTC 4 cut(s) 1126, 1198, 1270, 1414
Psp124BI GAGCTC 9 cut(s) 8, 80, 368, 512, 800, 872, 1016, 1232, 1304
PsuI RGATCY 2 cut(s) 880, 1312
RsaI GTAC 1 cut(s) 1175
RsaNI GTAC 1 cut(s) 1174
RseI CAYNNNNRTG 5 cut(s) 330, 359, 503, 863, 1007
SacI GAGCTC 9 cut(s) 8, 80, 368, 512, 800, 872, 1016, 1232, 1304
SaqAI TTAA 5 cut(s) 41, 113, 1049, 1193, 1265
Sau3AI GATC 2 cut(s) 880, 1312
SchI GAGTC 4 cut(s) 1126, 1198, 1270, 1414
SfaNI GCATC 9 cut(s) 193, 553, 625, 697, 1057, 1129, 1201, 1273, 1502
SfuI TTCGAA 4 cut(s) 344, 488, 848, 992
SmiMI CAYNNNNRTG 5 cut(s) 330, 359, 503, 863, 1007
SsiI CCGC 1 cut(s) 837
SstI GAGCTC 9 cut(s) 8, 80, 368, 512, 800, 872, 1016, 1232, 1304
TaaI ACNGT 1 cut(s) 1507
TaqI TCGA 4 cut(s) 344, 488, 848, 992
Tru1I TTAA 5 cut(s) 41, 113, 1049, 1193, 1265
Tru9I TTAA 5 cut(s) 41, 113, 1049, 1193, 1265
TspDTI ATGAA 1 cut(s) 256
XmnI GAANNNNTTC 4 cut(s) 350, 494, 854, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.