RchiOBHm_Chr1g0359281

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017712
Physical Location & Seq
Reverse (-)
51296346 .. 51296852
507 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58434

Sequence Viewer

Length: 429 bp
ATGCCGAAGAACAAAGGAAAGGGAGGCAAGAACCGGAAGAGAGGGAAGAACGAAGCCGACGACGAGAAGCGCGAGCTCCTCTTCAAAGAGGACGGCCAGGAATACGCGCAGGTCACACGCATGTTAGGCAACGGCCGGTTGGAAGCCAAATGCCACGACGGCGTCGCCCGCCTCTGCCACATCTCCGGCAAGCTACACAAGAAGGTCTGGATCGCCGCCGGCGATATTCTCCTCGTCGGGCTAAGGGACTACCAGGATGGCAAGGCTGATGTCATCCACAAGTACATGCCCGACGAGGCACGGTTGCTCAAGGCTTATGGGGAGTTGAATGACAGTTTCAGGCCGAATGAGGGCGGCAATGATGACGACGACGACAACAATGGCGATGGTTACATAGAGTTTGAGGATGCTGATGTTGATAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
eIF-1a

Protein Analysis

142

Amino Acids

15.96

Weight (kDa)

5.41

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-1a PF01176 32 - 94 2.6e-23 Translation initiation factor 1A / IF-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017712)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16270
rosa_chinensis RchiOBHm_Chr1g0359281
rosa_laevigata RLG00000027886
rosa_multiflora Rmu_sc0039464.1_g000001 Rmu_ssc0000135.1_g000036 Rmu_ssc0000135.1_g000037
rosa_roxburghii Rroxscaffold_4G00297160
rosa_rugosa Rorug01G0269100 Rorug01G0269200
rosa_samantha Rh1AG283100 Rh1CG267100
rosa_wichuraiana Rw1G025130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccII CGCG 2 cut(s) 72, 107
AciI CCGC 3 cut(s) 169, 216, 354
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 2 cut(s) 94, 133
AcsI RAATTY 1 cut(s) 423
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 2 cut(s) 85, 328
AjnI CCWGG 2 cut(s) 96, 252
AluBI AGCT 2 cut(s) 76, 193
AluI AGCT 2 cut(s) 76, 193
Alw21I GWGCWC 1 cut(s) 78
AlwI GGATC 1 cut(s) 218
AoxI GGCC 3 cut(s) 94, 133, 341
ApoI RAATTY 1 cut(s) 423
AspLEI GCGC 2 cut(s) 72, 109
BanII GRGCYC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 78
BccI CCATC 2 cut(s) 251, 380
BceAI ACGGC 3 cut(s) 109, 148, 175
BciT130I CCWGG 2 cut(s) 98, 254
BfuAI ACCTGC 1 cut(s) 100
BglI GCCNNNNNGGC 1 cut(s) 159
BisI GCNGC 2 cut(s) 216, 355
BlsI GCNGC 2 cut(s) 217, 356
Bme1390I CCNGG 2 cut(s) 98, 254
BmrFI CCNGG 2 cut(s) 98, 254
BmsI GCATC 1 cut(s) 397
Bpu10I CCTNAGC 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse118I RCCGGY 2 cut(s) 135, 218
Bse3DI GCAATG 1 cut(s) 364
BseBI CCWGG 2 cut(s) 98, 254
BseGI GGATG 3 cut(s) 262, 273, 412
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 1 cut(s) 364
BseRI GAGGAG 2 cut(s) 68, 221
BseX3I CGGCCG 1 cut(s) 133
Bsh1236I CGCG 2 cut(s) 72, 107
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 3 cut(s) 96, 135, 343
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 4 cut(s) 34, 136, 186, 219
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 3 cut(s) 96, 135, 343
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 3 cut(s) 169, 216, 354
BspANI GGCC 3 cut(s) 96, 135, 343
BspFNI CGCG 2 cut(s) 72, 107
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 364
BsrFI RCCGGY 2 cut(s) 135, 218
BssAI RCCGGY 2 cut(s) 135, 218
BssMI GATC 1 cut(s) 210
BssNI GRCGYC 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 98, 254
Bst4CI ACNGT 2 cut(s) 303, 335
Bst6I CTCTTC 2 cut(s) 32, 86
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 4 cut(s) 74, 169, 191, 220
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 3 cut(s) 262, 273, 412
BstFNI CGCG 2 cut(s) 72, 107
BstHHI GCGC 2 cut(s) 72, 109
BstKTI GATC 1 cut(s) 213
BstMBI GATC 1 cut(s) 210
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 3 cut(s) 126, 159, 168
BstNI CCWGG 2 cut(s) 98, 254
BstNSI RCATGY 2 cut(s) 124, 289
BstSCI CCNGG 2 cut(s) 96, 252
BstUI CGCG 2 cut(s) 72, 107
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 3 cut(s) 96, 135, 343
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 3 cut(s) 262, 273, 412
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 4 cut(s) 74, 169, 191, 220
CfoI GCGC 2 cut(s) 72, 109
Cfr10I RCCGGY 2 cut(s) 135, 218
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 283
CviAII CATG 2 cut(s) 121, 286
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 1 cut(s) 242
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
EaeI YGGCCR 2 cut(s) 94, 133
EagI CGGCCG 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 32, 86
EarI CTCTTC 2 cut(s) 32, 86
Ecl136II GAGCTC 1 cut(s) 76
EclXI CGGCCG 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 78
Eco52I CGGCCG 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 96, 252
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 2 cut(s) 124, 289
FaiI YATR 4 cut(s) 122, 287, 318, 395
FaqI GGGAC 1 cut(s) 260
FatI CATG 2 cut(s) 120, 285
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 216, 355
FokI GGATG 3 cut(s) 260, 269, 419
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 2 cut(s) 216, 355
GlaI GCGC 2 cut(s) 71, 108
GluI GCNGC 2 cut(s) 216, 355
HaeIII GGCC 3 cut(s) 96, 135, 343
HapII CCGG 4 cut(s) 34, 136, 186, 219
HgaI GACGC 1 cut(s) 151
HhaI GCGC 2 cut(s) 72, 109
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 2 cut(s) 124, 289
Hin6I GCGC 2 cut(s) 70, 107
HinP1I GCGC 2 cut(s) 70, 107
HpaII CCGG 4 cut(s) 34, 136, 186, 219
Hpy188III TCNNGA 1 cut(s) 208
Hpy99I CGWCG 8 cut(s) 62, 65, 161, 167, 239, 296, 371, 374
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 2 cut(s) 303, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 159, 168
HpyF3I CTNAG 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 2 cut(s) 124, 289
HspAI GCGC 2 cut(s) 70, 107
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 81
LweI GCATC 1 cut(s) 397
MaeIII GTNAC 2 cut(s) 112, 389
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 4 cut(s) 19, 49, 58, 73
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 9 cut(s) 17, 35, 82, 89, 182, 242, 289, 343, 397
MreI CGCCGGCG 1 cut(s) 218
MroNI GCCGGC 1 cut(s) 218
MslI CAYNNNNRTG 1 cut(s) 119
MspI CCGG 4 cut(s) 34, 136, 186, 219
MspR9I CCNGG 2 cut(s) 98, 254
MvaI CCWGG 2 cut(s) 98, 254
MvnI CGCG 2 cut(s) 72, 107
MwoI GCNNNNNNNGC 3 cut(s) 126, 159, 168
NaeI GCCGGC 1 cut(s) 220
NdeII GATC 1 cut(s) 210
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 2 cut(s) 124, 289
NmuCI GTSAC 1 cut(s) 112
NspI RCATGY 2 cut(s) 124, 289
PcsI WCGNNNNNNNCGW 3 cut(s) 57, 69, 219
PdiI GCCGGC 1 cut(s) 220
PflFI GACNNNGTC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 217, 356
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 96, 252
PspGI CCWGG 2 cut(s) 96, 252
PsyI GACNNNGTC 1 cut(s) 161
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 119
SacI GAGCTC 1 cut(s) 78
SatI GCNGC 2 cut(s) 216, 355
Sau3AI GATC 1 cut(s) 210
ScrFI CCNGG 2 cut(s) 98, 254
SduI GDGCHC 1 cut(s) 78
SetI ASST 4 cut(s) 78, 114, 195, 207
SfaNI GCATC 1 cut(s) 397
SgrAI CRCCGGYG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 1 cut(s) 423
SsiI CCGC 3 cut(s) 169, 216, 354
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 96, 252
TaaI ACNGT 2 cut(s) 303, 335
TasI AATT 1 cut(s) 423
TatI WGTACW 1 cut(s) 282
TauI GCSGC 2 cut(s) 218, 357
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 161
XapI RAATTY 1 cut(s) 423
XceI RCATGY 2 cut(s) 124, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.