Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020474

Physical Location & Seq

Genomic Coordinates Forward (+)

53520078 .. 53520956

Gene Structure 879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58651

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCTAGCACGGGCTAGGGGCTGCGGCAGTTTTGGCGATATGAAATTCTTTTCGGGTTTTTGGCTTTTTGGCTATTGTGGTTTAGGGCTCGTGCTGATAACGTGTTTAAGTATATTGGAGGAATTTTGCAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCGCAAAGTACTCCAAGACCTTTGAAACTGACGAAGGAAAGAAGAATATTGAAGGACAGTTTGAGAAACTGATTAAATATGCTACAGTTATTCGAGTTTTGGCTCACACTCAGATCAGAAAGATGAAGGGTTTGAAGCAGAAGAAAGCACATCTCATGGAGATCCAGGTGAATGGTGGCACAATTGCACAAAATGTTGAATTTGCAAAGAGCTTCTTTGAGAAGCAAATCCCTATTGATGCCGTCTTCCAGAAAGATGAAATGATTGACATCATTGGTGTGACAAAGGGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTCACCCGGCTTCCCCGTAAGACCCATAGGGTTGTGCGTAAGGTTGCTTGTATTGGTGCATGGCATCCTGCCAGAGTTTCATTTACAGTTGCCAAGGCTGTAACTGGTTTACACTTGGTTGAGAATAATTTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

206

Amino Acids

23.29

Weight (kDa)

9.83

Isoelectric Point (pI)

19.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L3	PF00297	41 - 194	5.2e-71	Ribosomal protein L3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020474)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361591 RchiOBHm_Chr1g0361651
rosa_multiflora	Rmu_co8334785.1_g000001 Rmu_sc0003426.1_g000008 Rmu_sc0010981.1_g000001 Rmu_sc0024847.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	316
AcsI	RAATTY	3 cut(s)	44, 122, 359
AfaI	GTAC	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	185, 212, 295, 359
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	1 cut(s)	372
AluI	AGCT	1 cut(s)	372
AlwI	GGATC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	3 cut(s)	44, 122, 359
Asp700I	GAANNNNTTC	2 cut(s)	158, 611
AsuC2I	CCSGG	1 cut(s)	490
AsuHPI	GGTGA	2 cut(s)	340, 478
AsuNHI	GCTAGC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	90
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	8
BceAI	ACGGC	1 cut(s)	386
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	490
BfaI	CTAG	2 cut(s)	5, 15
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	2 cut(s)	22, 25
BlsI	GCNGC	2 cut(s)	23, 26
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	326, 490
BmrFI	CCNGG	2 cut(s)	326, 490
BmsI	GCATC	2 cut(s)	388, 556
BmtI	GCTAGC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	490
BsaBI	GATNNNNATC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	576
Bse1I	ACTGG	2 cut(s)	140, 592
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	1 cut(s)	547
BseJI	GATNNNNATC	1 cut(s)	428
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	2 cut(s)	140, 592
BseXI	GCAGC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	273, 321
BspACI	CCGC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	283
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	140, 592
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	2 cut(s)	273, 321
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	576
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	3 cut(s)	219, 247, 571
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	2 cut(s)	276, 324
BstMBI	GATC	2 cut(s)	273, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	324, 488
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	321
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	2 cut(s)	316, 543
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	2 cut(s)	275, 323
DpnII	GATC	2 cut(s)	273, 321
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	2 cut(s)	319, 546
FaiI	YATR	9 cut(s)	41, 113, 240, 317, 459, 510, 544, 617, 619
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FatI	CATG	2 cut(s)	315, 542
Fnu4HI	GCNGC	2 cut(s)	22, 25
FokI	GGATG	1 cut(s)	534
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	22, 25
FspBI	CTAG	2 cut(s)	5, 15
GluI	GCNGC	2 cut(s)	22, 25
HapII	CCGG	1 cut(s)	490
Hin1II	CATG	2 cut(s)	319, 546
HpaII	CCGG	1 cut(s)	490
HphI	GGTGA	2 cut(s)	340, 478
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	2 cut(s)	273, 278
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	1 cut(s)	593
HpyAV	CCTTC	5 cut(s)	148, 188, 206, 280, 455
HpyCH4III	ACNGT	3 cut(s)	219, 247, 571
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	5 cut(s)	129, 141, 347, 365, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	319, 546
Kzo9I	GATC	2 cut(s)	273, 321
LpnPI	CCDG	8 cut(s)	121, 311, 338, 422, 503, 564, 568, 573
Lsp1109I	GCAGC	1 cut(s)	8
LweI	GCATC	2 cut(s)	388, 556
MaeI	CTAG	2 cut(s)	5, 15
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	4 cut(s)	439, 469, 484, 583
MalI	GATC	2 cut(s)	275, 323
MboI	GATC	2 cut(s)	273, 321
MboII	GAAGA	4 cut(s)	163, 214, 313, 397
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	5 cut(s)	44, 122, 342, 359, 610
MnlI	CCTC	1 cut(s)	112
MroXI	GAANNNNTTC	2 cut(s)	158, 611
MseI	TTAA	2 cut(s)	107, 234
MslI	CAYNNNNRTG	1 cut(s)	437
MspI	CCGG	1 cut(s)	490
MspR9I	CCNGG	2 cut(s)	326, 490
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	490
NdeII	GATC	2 cut(s)	273, 321
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	319, 546
NmuCI	GTSAC	2 cut(s)	439, 484
PdmI	GAANNNNTTC	2 cut(s)	158, 611
PkrI	GCNGC	2 cut(s)	23, 26
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	321
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	2 cut(s)	107, 234
SatI	GCNGC	2 cut(s)	22, 25
Sau3AI	GATC	2 cut(s)	273, 321
ScaI	AGTACT	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	326, 490
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	6 cut(s)	104, 182, 330, 374, 466, 528
SfaNI	GCATC	2 cut(s)	388, 556
SfcI	CTRYAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	437
Sse9I	AATT	5 cut(s)	44, 122, 342, 359, 610
SsiI	CCGC	1 cut(s)	24
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	2 cut(s)	5, 15
StyD4I	CCNGG	2 cut(s)	324, 488
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	3 cut(s)	219, 247, 571
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	253
TasI	AATT	5 cut(s)	44, 122, 342, 359, 610
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	107, 234
Tru9I	TTAA	2 cut(s)	107, 234
TseFI	GTSAC	2 cut(s)	439, 484
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	2 cut(s)	439, 484
TspDTI	ATGAA	6 cut(s)	56, 299, 432, 474, 552, 604
XapI	RAATTY	3 cut(s)	44, 122, 359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmnI	GAANNNNTTC	2 cut(s)	158, 611
XspI	CTAG	2 cut(s)	5, 15
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.