Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003426.1

Orthogroup ID

OG0020474

Physical Location & Seq

Genomic Coordinates Reverse (-)

40645 .. 42262

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003426.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgaagggtttgaagcagaagaaagcacatctcatggagatccaggtgaatggtggcacaattgctcaaaatgttgaatttgcaaagagcttctttgagaagcaaatccctattgctgccgtcttccagacagatgaaatgattgacatcattggtgtggcaaagggtaagggttatgaaggtgttgttactcgttggggtgtcacccggctttcccttattcgagttttggctcacactcagatcaggaagatgaagggtttgaagcagaagaaagcacatctcatggagatccaggtgaatggtggcacaattgctcaaaatgttgaatttgcaaagagcttctttgagaagcaaatccctattgctgccgtcttccagacagatgaaatgattgacatcattggtgtggcaaagggtaagggttatgaaggtgttgttactcgttggggtgtcacccggctttccctcctgcaaaaacgcaacacaatacacatgactggatcactaataataattgaaattgatggtgttctggttccggagatggatcacctggtagctcacgaggctcgtgcttgcacagatcgatttcagggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

200

Amino Acids

22.24

Weight (kDa)

9.55

Isoelectric Point (pI)

22.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020474)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0361591 RchiOBHm_Chr1g0361651
rosa_multiflora	Rmu_co8334785.1_g000001 Rmu_sc0003426.1_g000008 Rmu_sc0010981.1_g000001 Rmu_sc0024847.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	541
AclWI	GGATC	4 cut(s)	34, 286, 511, 558
AcsI	RAATTY	2 cut(s)	77, 329
AgsI	TTSAA	5 cut(s)	13, 77, 265, 329, 521
AjnI	CCWGG	3 cut(s)	42, 294, 555
AluBI	AGCT	3 cut(s)	90, 342, 563
AluI	AGCT	3 cut(s)	90, 342, 563
AlwI	GGATC	4 cut(s)	34, 286, 511, 558
Aor13HI	TCCGGA	1 cut(s)	541
ApeKI	GCWGC	2 cut(s)	116, 368
ApoI	RAATTY	2 cut(s)	77, 329
AsuC2I	CCSGG	2 cut(s)	208, 460
AsuHPI	GGTGA	5 cut(s)	58, 196, 310, 448, 545
BauI	CACGAG	2 cut(s)	566, 573
BbsI	GAAGAC	2 cut(s)	115, 367
BbvI	GCAGC	2 cut(s)	103, 355
BccI	CCATC	2 cut(s)	521, 541
BceAI	ACGGC	2 cut(s)	104, 356
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	3 cut(s)	44, 296, 557
BcnI	CCSGG	2 cut(s)	208, 460
BisI	GCNGC	2 cut(s)	117, 369
BlsI	GCNGC	2 cut(s)	118, 370
Bme1390I	CCNGG	5 cut(s)	44, 208, 296, 460, 557
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	5 cut(s)	44, 208, 296, 460, 557
BpiI	GAAGAC	2 cut(s)	115, 367
BpuMI	CCSGG	2 cut(s)	208, 460
Bsa29I	ATCGAT	1 cut(s)	589
BsaBI	GATNNNNATC	2 cut(s)	146, 398
BsaWI	WCCGGW	1 cut(s)	541
Bse1I	ACTGG	1 cut(s)	505
Bse8I	GATNNNNATC	2 cut(s)	146, 398
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	3 cut(s)	44, 296, 557
BseCI	ATCGAT	1 cut(s)	589
BseJI	GATNNNNATC	2 cut(s)	146, 398
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	505
BseXI	GCAGC	2 cut(s)	103, 355
BshVI	ATCGAT	1 cut(s)	589
BsiSI	CCGG	3 cut(s)	208, 460, 542
Bsp13I	TCCGGA	1 cut(s)	541
Bsp143I	GATC	6 cut(s)	39, 243, 291, 503, 550, 586
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	589
BspEI	TCCGGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	540
BspPI	GGATC	4 cut(s)	34, 286, 511, 558
BsrI	ACTGG	1 cut(s)	505
BssMI	GATC	6 cut(s)	39, 243, 291, 503, 550, 586
BssSI	CACGAG	2 cut(s)	566, 573
Bst2BI	CACGAG	2 cut(s)	566, 573
Bst2UI	CCWGG	3 cut(s)	44, 296, 557
BstC8I	GCNNGC	1 cut(s)	580
BstDEI	CTNAG	1 cut(s)	240
BstKTI	GATC	6 cut(s)	42, 246, 294, 506, 553, 589
BstMBI	GATC	6 cut(s)	39, 243, 291, 503, 550, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstNI	CCWGG	3 cut(s)	44, 296, 557
BstSCI	CCNGG	5 cut(s)	42, 206, 294, 458, 555
BstV1I	GCAGC	2 cut(s)	103, 355
BstV2I	GAAGAC	2 cut(s)	115, 367
BstX2I	RGATCY	2 cut(s)	39, 291
BstXI	CCANNNNNNTGG	2 cut(s)	50, 302
BstYI	RGATCY	2 cut(s)	39, 291
Bsu15I	ATCGAT	1 cut(s)	589
BsuTUI	ATCGAT	1 cut(s)	589
Cac8I	GCNNGC	1 cut(s)	580
ClaI	ATCGAT	1 cut(s)	589
CsiI	ACCWGGT	1 cut(s)	555
CviAII	CATG	3 cut(s)	34, 286, 496
CviJI	RGCY	7 cut(s)	90, 211, 233, 342, 463, 563, 572
CviKI_1	RGCY	7 cut(s)	90, 211, 233, 342, 463, 563, 572
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	6 cut(s)	41, 245, 293, 505, 552, 588
DpnII	GATC	6 cut(s)	39, 243, 291, 503, 550, 586
EcoRII	CCWGG	3 cut(s)	42, 294, 555
FaeI	CATG	3 cut(s)	37, 289, 499
FaiI	YATR	5 cut(s)	35, 177, 287, 429, 497
FalI	AAGNNNNNCTT	4 cut(s)	77, 109, 329, 361
FatI	CATG	3 cut(s)	33, 285, 495
Fnu4HI	GCNGC	2 cut(s)	117, 369
Fsp4HI	GCNGC	2 cut(s)	117, 369
GluI	GCNGC	2 cut(s)	117, 369
HapII	CCGG	3 cut(s)	208, 460, 542
Hin1II	CATG	3 cut(s)	37, 289, 499
HpaII	CCGG	3 cut(s)	208, 460, 542
HphI	GGTGA	5 cut(s)	58, 196, 310, 448, 545
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	5 cut(s)	127, 247, 379, 542, 566
HpyAV	CCTTC	3 cut(s)	173, 250, 425
HpyCH4V	TGCA	4 cut(s)	83, 335, 475, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	37, 289, 499
Kpn2I	TCCGGA	1 cut(s)	541
Kzo9I	GATC	6 cut(s)	39, 243, 291, 503, 550, 586
Lsp1109I	GCAGC	2 cut(s)	103, 355
MabI	ACCWGGT	1 cut(s)	555
MaeIII	GTNAC	4 cut(s)	187, 202, 439, 454
MalI	GATC	6 cut(s)	41, 245, 293, 505, 552, 588
MboI	GATC	6 cut(s)	39, 243, 291, 503, 550, 586
MboII	GAAGA	5 cut(s)	31, 115, 262, 283, 367
MfeI	CAATTG	2 cut(s)	60, 312
MflI	RGATCY	2 cut(s)	39, 291
MluCI	AATT	6 cut(s)	60, 77, 312, 329, 516, 522
MnlI	CCTC	2 cut(s)	479, 562
MroI	TCCGGA	1 cut(s)	541
MslI	CAYNNNNRTG	2 cut(s)	155, 407
MspI	CCGG	3 cut(s)	208, 460, 542
MspR9I	CCNGG	5 cut(s)	44, 208, 296, 460, 557
MunI	CAATTG	2 cut(s)	60, 312
MvaI	CCWGG	3 cut(s)	44, 296, 557
MwoI	GCNNNNNNNGC	1 cut(s)	569
NciI	CCSGG	2 cut(s)	208, 460
NdeII	GATC	6 cut(s)	39, 243, 291, 503, 550, 586
NlaIII	CATG	3 cut(s)	37, 289, 499
NlaIV	GGNNCC	1 cut(s)	540
NmuCI	GTSAC	2 cut(s)	202, 454
PkrI	GCNGC	2 cut(s)	118, 370
Psp6I	CCWGG	3 cut(s)	42, 294, 555
PspGI	CCWGG	3 cut(s)	42, 294, 555
PspN4I	GGNNCC	1 cut(s)	540
PsuI	RGATCY	2 cut(s)	39, 291
RseI	CAYNNNNRTG	2 cut(s)	155, 407
SatI	GCNGC	2 cut(s)	117, 369
Sau3AI	GATC	6 cut(s)	39, 243, 291, 503, 550, 586
ScrFI	CCNGG	5 cut(s)	44, 208, 296, 460, 557
SetI	ASST	8 cut(s)	48, 92, 184, 300, 344, 436, 558, 565
SexAI	ACCWGGT	1 cut(s)	555
SmiMI	CAYNNNNRTG	2 cut(s)	155, 407
Sse9I	AATT	6 cut(s)	60, 77, 312, 329, 516, 522
StyD4I	CCNGG	5 cut(s)	42, 206, 294, 458, 555
TaqI	TCGA	2 cut(s)	223, 589
TasI	AATT	6 cut(s)	60, 77, 312, 329, 516, 522
TseFI	GTSAC	2 cut(s)	202, 454
TseI	GCWGC	2 cut(s)	116, 368
Tsp45I	GTSAC	2 cut(s)	202, 454
TspDTI	ATGAA	6 cut(s)	17, 150, 192, 269, 402, 444
XapI	RAATTY	2 cut(s)	77, 329
XcmI	CCANNNNNNNNNTGG	2 cut(s)	50, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.