Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022395

Physical Location & Seq

Genomic Coordinates Forward (+)

57232307 .. 57232965

Gene Structure 659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGTCAAGAGCAACAGTTTGCTGCAGATGAAATCTCAGCCATGCCTTCTTGCAAGGATGCAAGAGACTGCCGAGGCCTATTTCAGCTCAGCTGTTAAAAATGCAGTTGTTACTGTGCCAGTTTACTTCAATACCAAAGACACTGGCATGCTGCTGTTCTGCTGGCCTAAATGTGAGTTGTATTATCAACGAACCAACTGCAGCAGCTATTGCATATTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016567 GO:0017076 GO:0019538 GO:0019899 GO:0030312 GO:0030554 GO:0031090 GO:0031625 GO:0032446 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046686 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

74

Amino Acids

8.47

Weight (kDa)

8.66

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	15 - 46	6.2e-07	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022395)

Species	Orthologous Gene IDs
malus_domestica	MD08G1250700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0366771
rosa_laevigata	RLG00000027323
rosa_samantha	Rh6BG022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	3 cut(s)	87, 92, 207
AluI	AGCT	3 cut(s)	87, 92, 207
Alw26I	GTCTC	1 cut(s)	59
AoxI	GGCC	2 cut(s)	75, 164
ApeKI	GCWGC	4 cut(s)	22, 151, 201, 204
BbvI	GCAGC	4 cut(s)	9, 138, 213, 216
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BcoDI	GTCTC	1 cut(s)	59
BfmI	CTRYAG	2 cut(s)	23, 199
BisI	GCNGC	4 cut(s)	23, 152, 202, 205
BlpI	GCTNAGC	1 cut(s)	88
BlsI	GCNGC	4 cut(s)	24, 153, 203, 206
BmsI	GCATC	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	119, 148
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	50, 102
BseNI	ACTGG	2 cut(s)	119, 148
BseXI	GCAGC	4 cut(s)	9, 138, 213, 216
BshFI	GGCC	2 cut(s)	77, 166
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	77, 166
Bsp1720I	GCTNAGC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	77, 166
BspCNI	CTCAG	2 cut(s)	49, 101
BspMAI	CTGCAG	2 cut(s)	27, 203
BsrI	ACTGG	2 cut(s)	119, 148
BssECI	CCNNGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	17, 115
BstAPI	GCANNNNNTGC	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	149, 164
BstDEI	CTNAG	2 cut(s)	36, 88
BstF5I	GGATG	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	59
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	151
BstSFI	CTRYAG	2 cut(s)	23, 199
BstV1I	GCAGC	4 cut(s)	9, 138, 213, 216
BsuRI	GGCC	2 cut(s)	77, 166
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	149, 164
CviAII	CATG	2 cut(s)	42, 148
CviJI	RGCY	6 cut(s)	40, 77, 87, 92, 166, 207
CviKI_1	RGCY	6 cut(s)	40, 77, 87, 92, 166, 207
DdeI	CTNAG	2 cut(s)	36, 88
Eco147I	AGGCCT	1 cut(s)	77
FaeI	CATG	2 cut(s)	45, 151
FaiI	YATR	3 cut(s)	43, 149, 215
FatI	CATG	2 cut(s)	41, 147
Fnu4HI	GCNGC	4 cut(s)	23, 152, 202, 205
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	4 cut(s)	23, 152, 202, 205
GluI	GCNGC	4 cut(s)	23, 152, 202, 205
HaeIII	GGCC	2 cut(s)	77, 166
Hin1II	CATG	2 cut(s)	45, 151
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	2 cut(s)	17, 115
HpyCH4V	TGCA	6 cut(s)	25, 53, 61, 104, 201, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpyF3I	CTNAG	2 cut(s)	36, 88
Hsp92II	CATG	2 cut(s)	45, 151
LpnPI	CCDG	3 cut(s)	129, 132, 148
Lsp1109I	GCAGC	4 cut(s)	9, 138, 213, 216
LweI	GCATC	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	109
MnlI	CCTC	1 cut(s)	67
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	210
NlaIII	CATG	2 cut(s)	45, 151
NmeAIII	GCCGAG	1 cut(s)	97
NspI	RCATGY	1 cut(s)	151
PaeI	GCATGC	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	24, 153, 203, 206
PstI	CTGCAG	2 cut(s)	27, 203
PvuII	CAGCTG	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	4 cut(s)	23, 152, 202, 205
SetI	ASST	3 cut(s)	89, 94, 209
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	2 cut(s)	23, 199
SmiMI	CAYNNNNRTG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	151
SseBI	AGGCCT	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	17, 115
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	4 cut(s)	22, 151, 201, 204
TspDTI	ATGAA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	148
XceI	RCATGY	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.