Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0022395

Physical Location & Seq

Genomic Coordinates Forward (+)

3380936 .. 3381121

Gene Structure 186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG022800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCGCGAAATTGCAGAGGCCTATCTTGGACTAACAATAAAGAATGTTGTTTTAACTGTACCAGCATACTTCAATGACTCTCAACGACAGGCTACAAAAGATTCTGGGGTGATTGCAGGCATGAATGTGATGCGTATTCTTAATGAGCCAACAGCCGCAGCTATTGCATATGGTCTTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009628 GO:0009941 GO:0009987 GO:0010029 GO:0010035 GO:0010038 GO:0010118 GO:0010187 GO:0012505 GO:0016020 GO:0016363 GO:0019899 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0034399 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0080167 GO:0090332 GO:0098542 GO:0098588 GO:0098805 GO:1900140 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

61

Amino Acids

6.59

Weight (kDa)

5.05

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	1 - 60	2.4e-30	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0022395)

Species	Orthologous Gene IDs
malus_domestica	MD08G1250700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0366771
rosa_laevigata	RLG00000027323
rosa_samantha	Rh6BG022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	6
AciI	CCGC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	60
AgsI	TTSAA	1 cut(s)	73
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	170
BisI	GCNGC	2 cut(s)	156, 159
BlsI	GCNGC	2 cut(s)	157, 160
BmsI	GCATC	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	20
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	5 cut(s)	20, 92, 148, 155, 161
CviKI_1	RGCY	5 cut(s)	20, 92, 148, 155, 161
CviQI	GTAC	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	20
FaeI	CATG	1 cut(s)	124
FaiI	YATR	4 cut(s)	67, 122, 169, 171
FatI	CATG	1 cut(s)	120
FauNDI	CATATG	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	156, 159
Fsp4HI	GCNGC	2 cut(s)	156, 159
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	156, 159
HaeIII	GGCC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	3 cut(s)	77, 101, 179
HphI	GGTGA	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	176, 183
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	14, 116, 167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	74, 75, 90, 102
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	120
MluCI	AATT	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	1 cut(s)	10
MseI	TTAA	2 cut(s)	53, 141
MslI	CAYNNNNRTG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeI	CATATG	1 cut(s)	169
NlaIII	CATG	1 cut(s)	124
PceI	AGGCCT	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	157, 160
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	53, 141
SatI	GCNGC	2 cut(s)	156, 159
SchI	GAGTC	1 cut(s)	71
SetI	ASST	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	120
SgeI	CNNG	7 cut(s)	17, 38, 74, 101, 117, 129, 133
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	9
SseBI	AGGCCT	1 cut(s)	20
SsiI	CCGC	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	58
TasI	AATT	1 cut(s)	9
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	2 cut(s)	53, 141
Tru9I	TTAA	2 cut(s)	53, 141
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.