RchiOBHm_Chr1g0367611

protein serine/threonine kinase activity

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
57964671 .. 57965488
818 bp
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UTR
Exon/CDS
Intron
PRQ59203

Sequence Viewer

Length: 348 bp
ATGGTAATTGCTGTGAAGACAATTAACCGAGGAGGTTTACAGGGTAACAAGGAATGGTTGACAGAAATTTACTACCTAGGAAGGCTGCATCATCCAAATGTTGTGAAATTGTTGGGTTATTGCTTCGAGGATGACCACCGGCTTCTGGTTTATGAATTCATGGCTAAAGGAAGCTTGGAGTTTCATCTATTTAGATGGTTTTCTTCCCTTCAACCACTTTCGTGGATCCTGCGTATGAAGATTGCCCTTGGTGCTGCCAAGTCTCTAGCATTTATTCATAATAGCGAGGGAAAAGTGATCCATCGGGCACTACTACAAAAAGTTAATCACACAACACCAATCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.34

Weight (kDa)

9.86

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 103 4.4e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 3 - 104 2.7e-14 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 220, 233, 292
AcsI RAATTY 2 cut(s) 66, 155
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 1 cut(s) 212
AleI CACNNNNGTG 1 cut(s) 220
AluBI AGCT 1 cut(s) 174
AluI AGCT 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 3 cut(s) 220, 233, 292
ApeKI GCWGC 2 cut(s) 85, 254
ApoI RAATTY 2 cut(s) 66, 155
AspA2I CCTAGG 1 cut(s) 76
AvrII CCTAGG 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 310
BamHI GGATCC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 23
BbvI GCAGC 2 cut(s) 72, 241
BccI CCATC 2 cut(s) 189, 309
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 2 cut(s) 77, 266
BisI GCNGC 2 cut(s) 86, 255
BlnI CCTAGG 1 cut(s) 76
BlsI GCNGC 2 cut(s) 87, 256
BmiI GGNNCC 1 cut(s) 227
BmsI GCATC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 28, 76, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse118I RCCGGY 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 28, 76, 247
BseGI GGATG 2 cut(s) 91, 136
BseLI CCNNNNNNNGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 45
BseSI GKGCMC 1 cut(s) 310
BseXI GCAGC 2 cut(s) 72, 241
BsiSI CCGG 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 2 cut(s) 225, 297
BspLI GGNNCC 1 cut(s) 227
BspPI GGATC 3 cut(s) 220, 233, 292
BsrFI RCCGGY 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 28, 76, 247
BssMI GATC 2 cut(s) 225, 297
BssT1I CCWWGG 2 cut(s) 76, 247
BstF5I GGATG 2 cut(s) 91, 136
BstKTI GATC 2 cut(s) 228, 300
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 2 cut(s) 225, 297
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSLI GKGCMC 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 72, 241
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 222
BstYI RGATCY 1 cut(s) 225
BtsCI GGATG 2 cut(s) 91, 136
Cfr10I RCCGGY 1 cut(s) 138
CviAII CATG 1 cut(s) 160
CviJI RGCY 4 cut(s) 85, 142, 164, 174
CviKI_1 RGCY 4 cut(s) 85, 142, 164, 174
DpnI GATC 2 cut(s) 227, 299
DpnII GATC 2 cut(s) 225, 297
Eco130I CCWWGG 2 cut(s) 76, 247
EcoRI GAATTC 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 76, 247
ErhI CCWWGG 2 cut(s) 76, 247
FaeI CATG 1 cut(s) 163
FaiI YATR 4 cut(s) 153, 161, 236, 279
FatI CATG 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 86, 255
FokI GGATG 2 cut(s) 78, 143
Fsp4HI GCNGC 2 cut(s) 86, 255
FspBI CTAG 2 cut(s) 77, 266
GluI GCNGC 2 cut(s) 86, 255
HapII CCGG 1 cut(s) 139
Hin1II CATG 1 cut(s) 163
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 172
HpaII CCGG 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 38, 60
Hpy188I TCNGA 1 cut(s) 344
Hpy8I GTNNAC 2 cut(s) 38, 60
HpyAV CCTTC 2 cut(s) 75, 218
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 163
Kzo9I GATC 2 cut(s) 225, 297
LpnPI CCDG 4 cut(s) 26, 131, 152, 242
Lsp1109I GCAGC 2 cut(s) 72, 241
LweI GCATC 1 cut(s) 97
MaeI CTAG 2 cut(s) 77, 266
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 227, 299
MboI GATC 2 cut(s) 225, 297
MboII GAAGA 3 cut(s) 28, 195, 250
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 5 cut(s) 6, 21, 66, 107, 155
MnlI CCTC 4 cut(s) 23, 26, 121, 280
MseI TTAA 2 cut(s) 24, 324
MslI CAYNNNNRTG 2 cut(s) 96, 220
MspI CCGG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 2 cut(s) 225, 297
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 1 cut(s) 227
OliI CACNNNNGTG 1 cut(s) 220
PkrI GCNGC 2 cut(s) 87, 256
PspN4I GGNNCC 1 cut(s) 227
PsuI RGATCY 1 cut(s) 225
RseI CAYNNNNRTG 2 cut(s) 96, 220
SaqAI TTAA 2 cut(s) 24, 324
SatI GCNGC 2 cut(s) 86, 255
Sau3AI GATC 2 cut(s) 225, 297
SduI GDGCHC 1 cut(s) 310
SetI ASST 3 cut(s) 37, 78, 176
SfaNI GCATC 1 cut(s) 97
SmiMI CAYNNNNRTG 2 cut(s) 96, 220
Sse9I AATT 5 cut(s) 6, 21, 66, 107, 155
SspMI CTAG 2 cut(s) 77, 266
StyI CCWWGG 2 cut(s) 76, 247
TaqI TCGA 1 cut(s) 126
TasI AATT 5 cut(s) 6, 21, 66, 107, 155
Tru1I TTAA 2 cut(s) 24, 324
Tru9I TTAA 2 cut(s) 24, 324
TseI GCWGC 2 cut(s) 85, 254
TspDTI ATGAA 5 cut(s) 148, 168, 173, 251, 266
XapI RAATTY 2 cut(s) 66, 155
XmaJI CCTAGG 1 cut(s) 76
XspI CTAG 2 cut(s) 77, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.