Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020464

Physical Location & Seq

Genomic Coordinates Forward (+)

44931127 .. 44933292

Gene Structure 2166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGATTTTGATCTCAACCCTTTAGTCAAGGTTTGGTATGACAGAGATCGCAGCAGGAGAGGGAGCCAGCTTTTGTTGGAAAATATCAGGGAGCTAACTAACTTGGATGATGTTATGGAGGAACTTGGACAGGGTCCCAATGAGGGATTGGAGGATTACCTGGATGATGACTACTTAGTTTTTGACTGCCCAGGTTCAAAGTTTGTTAGTACTGATGGCAGTACAGGCAGCAAGGCAGAAGTGAATTATTTGGGACAGTTTTATCATCCTAATCTTGTGAAACTAATTGGCTATTGCTTGGAAGATGAGCAGCGCCTTTTGGTATATGAATTCTTGCCTCGAGGCAGCCTGGAAAATCATTTGTTCAGGATAAGTTTTTTTAGAGATATCTCTGGATACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

134

Amino Acids

15.58

Weight (kDa)

4.42

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	79 - 121	2.3e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020464)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0367611 RchiOBHm_Chr3g0495411 RchiOBHm_Chr6g0249061 RchiOBHm_Chr6g0297651 RchiOBHm_Chr7g0223091
rosa_multiflora	Rmu_sc0003895.1_g000028

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	329
AfaI	GTAC	2 cut(s)	211, 223
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	198
AjnI	CCWGG	3 cut(s)	159, 190, 348
AluBI	AGCT	2 cut(s)	70, 94
AluI	AGCT	2 cut(s)	70, 94
Ama87I	CYCGRG	1 cut(s)	339
ApeKI	GCWGC	4 cut(s)	51, 228, 310, 345
ApoI	RAATTY	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	63, 240, 322, 357
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	3 cut(s)	161, 192, 350
BciVI	GTATCC	1 cut(s)	389
BfoI	RGCGCY	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	389
BisI	GCNGC	4 cut(s)	52, 229, 311, 346
BlsI	GCNGC	4 cut(s)	53, 230, 312, 347
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	3 cut(s)	161, 192, 350
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	3 cut(s)	65, 135, 136
BmrFI	CCNGG	3 cut(s)	161, 192, 350
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	3 cut(s)	161, 192, 350
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	3 cut(s)	112, 169, 265
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseXI	GCAGC	4 cut(s)	63, 240, 322, 357
BsiHKCI	CYCGRG	1 cut(s)	339
BslFI	GGGAC	2 cut(s)	120, 267
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	120, 267
BsoBI	CYCGRG	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	10, 46
BspLI	GGNNCC	3 cut(s)	65, 135, 136
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	10, 46
Bst2UI	CCWGG	3 cut(s)	161, 192, 350
Bst4CI	ACNGT	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	175
BstF5I	GGATG	3 cut(s)	112, 169, 265
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	2 cut(s)	13, 49
BstMBI	GATC	2 cut(s)	10, 46
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	3 cut(s)	161, 192, 350
BstSCI	CCNGG	3 cut(s)	159, 190, 348
BstV1I	GCAGC	4 cut(s)	63, 240, 322, 357
BsuI	GTATCC	1 cut(s)	389
BtsCI	GGATG	3 cut(s)	112, 169, 265
Cac8I	GCNNGC	1 cut(s)	68
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	210, 222
CviJI	RGCY	5 cut(s)	66, 70, 94, 291, 348
CviKI_1	RGCY	5 cut(s)	66, 70, 94, 291, 348
CviQI	GTAC	2 cut(s)	210, 222
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	2 cut(s)	12, 48
DpnII	GATC	2 cut(s)	10, 46
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	3 cut(s)	159, 190, 348
EcoRV	GATATC	1 cut(s)	388
FaiI	YATR	4 cut(s)	39, 116, 325, 327
FaqI	GGGAC	2 cut(s)	120, 267
Fnu4HI	GCNGC	4 cut(s)	52, 229, 311, 346
FokI	GGATG	3 cut(s)	119, 176, 252
Fsp4HI	GCNGC	4 cut(s)	52, 229, 311, 346
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	4 cut(s)	52, 229, 311, 346
HaeII	RGCGCY	1 cut(s)	316
HhaI	GCGC	1 cut(s)	315
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	367, 393
HpyCH4III	ACNGT	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	1 cut(s)	175
HspAI	GCGC	1 cut(s)	313
KflI	GGGWCCC	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	10, 46
LmnI	GCTCC	2 cut(s)	63, 91
Lsp1109I	GCAGC	4 cut(s)	63, 240, 322, 357
MalI	GATC	2 cut(s)	12, 48
MboI	GATC	2 cut(s)	10, 46
MboII	GAAGA	1 cut(s)	314
MluCI	AATT	3 cut(s)	244, 285, 329
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	6 cut(s)	53, 112, 136, 145, 335, 348
MspR9I	CCNGG	3 cut(s)	161, 192, 350
MvaI	CCWGG	3 cut(s)	161, 192, 350
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	2 cut(s)	10, 46
NlaIV	GGNNCC	3 cut(s)	65, 135, 136
PaeR7I	CTCGAG	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	132
PkrI	GCNGC	4 cut(s)	53, 230, 312, 347
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	3 cut(s)	159, 190, 348
PspGI	CCWGG	3 cut(s)	159, 190, 348
PspN4I	GGNNCC	3 cut(s)	65, 135, 136
PspPI	GGNCC	1 cut(s)	134
PspPPI	RGGWCCY	1 cut(s)	134
PspXI	VCTCGAGB	1 cut(s)	339
PsyI	GACNNNGTC	1 cut(s)	132
RsaI	GTAC	2 cut(s)	211, 223
RsaNI	GTAC	2 cut(s)	210, 222
SatI	GCNGC	4 cut(s)	52, 229, 311, 346
Sau3AI	GATC	2 cut(s)	10, 46
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	1 cut(s)	211
ScrFI	CCNGG	3 cut(s)	161, 192, 350
SetI	ASST	6 cut(s)	33, 72, 96, 162, 196, 402
Sfr274I	CTCGAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
Sse9I	AATT	3 cut(s)	244, 285, 329
StyD4I	CCNGG	3 cut(s)	159, 190, 348
TaaI	ACNGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	340
TasI	AATT	3 cut(s)	244, 285, 329
TatI	WGTACW	2 cut(s)	209, 221
TseI	GCWGC	4 cut(s)	51, 228, 310, 345
TspDTI	ATGAA	1 cut(s)	342
Tth111I	GACNNNGTC	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.