RchiOBHm_Chr2g0104841

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
16123648 .. 16124196
549 bp
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UTR
Exon/CDS
Intron
PRQ47908

Sequence Viewer

Length: 144 bp
ATGGAACCTCCACAAGCACAAGCCATAGAGACTTCAACCACCTACCAAGAAGATGAACAGGACAAAGTCATCAACGACTGTTGCTCTTGCTGCTTTGACTGCACCGAGACCATTCTTGATTACTTGTTCTGCGGTTTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

47

Amino Acids

5.35

Weight (kDa)

4.05

Isoelectric Point (pI)

68.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019193)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15540
malus_domestica MD02G1167600.v1.1 MD15G1279800.v1.1
prunus_persica Prupe.7G137600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0104841
rosa_roxburghii Rroxscaffold_2G00138730
rosa_samantha Rh2CG178500 Rh7BG136600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 132
AgsI TTSAA 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 23, 101
ApeKI GCWGC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 23, 101
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 101
BseXI GCAGC 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 23, 101
Bso31I GGTCTC 1 cut(s) 101
BspACI CCGC 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 6
BspTNI GGTCTC 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 80
BstMAI GTCTC 2 cut(s) 23, 101
BstMWI GCNNNNNNNGC 2 cut(s) 90, 99
BstV1I GCAGC 1 cut(s) 77
CviJI RGCY 1 cut(s) 23
CviKI_1 RGCY 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 101
FaiI YATR 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 99
LpnPI CCDG 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 77
MboII GAAGA 1 cut(s) 62
MnlI CCTC 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 90, 99
NlaIV GGNNCC 1 cut(s) 6
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 65
SatI GCNGC 1 cut(s) 91
SetI ASST 2 cut(s) 10, 44
SgeI CNNG 8 cut(s) 26, 32, 59, 71, 99, 118, 128, 136
SsiI CCGC 1 cut(s) 132
TaaI ACNGT 1 cut(s) 80
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 69
Tth111I GACNNNGTC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.