RchiOBHm_Chr2g0116841

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
29071555 .. 29075443
3889 bp
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UTR
Exon/CDS
Intron
PRQ48985

Sequence Viewer

Length: 177 bp
ATGACTGCCTCCTTAACTGCGGCTCTTCCTCCAACGCCACCTTCTTCAACGACTTCTTCATCGGAGATTTCAATTCCGGCTCGGGTTTTGTCTTCAACAACAAAATCCCACCTCCAAACTCACCCTCTCCTTACCACACAGCAAGAGGTCTCACCACTACTTCAAGCTATAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.0

Weight (kDa)

6.7

Isoelectric Point (pI)

69.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020507)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AgsI TTSAA 4 cut(s) 48, 72, 96, 164
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AluBI AGCT 2 cut(s) 167, 173
AluI AGCT 2 cut(s) 167, 173
Alw26I GTCTC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 113, 144
AvaI CYCGRG 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 154
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 81
BspACI CCGC 1 cut(s) 20
BspQI GCTCTTC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 84
CviJI RGCY 4 cut(s) 23, 80, 167, 173
CviKI_1 RGCY 4 cut(s) 23, 80, 167, 173
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 81
FaiI YATR 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
HapII CCGG 1 cut(s) 77
HpaII CCGG 1 cut(s) 77
HphI GGTGA 2 cut(s) 113, 144
Hpy188I TCNGA 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 51
LguI GCTCTTC 1 cut(s) 30
LpnPI CCDG 1 cut(s) 90
MboII GAAGA 4 cut(s) 17, 36, 48, 84
MluCI AATT 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 5 cut(s) 19, 39, 122, 135, 139
MseI TTAA 2 cut(s) 14, 175
MspI CCGG 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 30
PkrI GCNGC 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 14, 175
SatI GCNGC 1 cut(s) 21
SetI ASST 5 cut(s) 43, 114, 150, 169, 175
SfcI CTRYAG 1 cut(s) 168
SgeI CNNG 4 cut(s) 89, 93, 95, 155
Sse9I AATT 1 cut(s) 72
SsiI CCGC 1 cut(s) 20
TasI AATT 1 cut(s) 72
TauI GCSGC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 14, 175
Tru9I TTAA 2 cut(s) 14, 175
TspDTI ATGAA 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.