Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0020507

Physical Location & Seq

Genomic Coordinates Forward (+)

12019741 .. 12022811

Gene Structure 3071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0074100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTCAAAAACAAGCAGCAGCTGCGCCTCACAAGTCATAACATGCAAAGCGGCTGTATGTTGGGGAGTGGGAGAAGAGTGCAAGGTGGAAGAGATACAAGTAGAGCCACCACATAAGTTTGAAGTTCGTGTCAAGATGCTCTATGCCAGTCTCTGTCACACTGACATCGTCTTCTCCAAAGGACACCCAATTCCTCTTTTCCCTCGCGTTCTTGGACATGAGGGCGTCGGTGTGGTAGAGAGCATCGGAGAAGAAGTAAGCGCAGAGGATTTCAAACAAGGAGACATCGTGATACCAACGTTTGTTTCAGAATGCCAAGAATGCGAGAATTGCTTGTTAGGCAAGTCCAACCTGTGCCTGAAATATCCGTTCACCATGAGCGGTCTAATGCTCGATGGTACTTCAAGAATGTCGACTGTCAAGGGGCAAAAGATGCTGTACCACTTCTTTTCGTGCTCCACATGGTCCGAGTACATGGTCATTAACGTCAATTACCTTGTCAAGCTCCACAACTGGGGTGCTCATGGTACTACTACACCACCTCTGTCCCACGCTAGCTTCCTCTCATGTGGATTCTCTACCGGATTTGGGGCTCCTTGGAAGGAAGCTAAGATTGAAAGAGGATCAACTGTTGCTGTTATTGGTCTTGGTGCTGTTGGATTAGGGGCAGTTGAGGGGGCTAGAATGCAAGGTGCAGCTAGGATCATCGGTGTCGACAAAAATGAGATGAAAAGAGAAAAAGGAATAGCTTTTGGAATGACTGATTTTATAAACCCTGACAATCACCAATCTGAACATGATCACGATCATGACAAATCAGTTTCTAAGCTCATCAAAGACTCTACAGATGGAATGGGTGTAGATTATTGCTTTGAGTGCACTGGCGTTGCATCCTTCATCAATGAAGCCCTTGGAGCCACAAAAATGGGTAAAGGAACAGCAGTTTTGCTAGGAGCCTCAGGTGTAAAAACCGTTCAAATTGATTTTCTCTCCCTGATGAGCGGCAGAACCTTGAAAGGGTCCCTGTTTGGAGGTCTCAAAGCCAAAACCGACCTTCCCATTCTCATCAACAAATGCATGAATATGGAAATGCAACTGGATGAACTCTTGACTCATGAAGTTCCTCTCGTAGATATTAACAAAGCATTTGAACTCTTAAAGCAGCCAGATTGTGTGAAGATTCTGATCAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

398

Amino Acids

43.23

Weight (kDa)

6.12

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	41 - 170	1.4e-19	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	218 - 349	8.6e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020507)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0116841 RchiOBHm_Chr7g0193281
rosa_rugosa	Rorug01G0074100
rosa_samantha	Rh1AG011700 Rh1AG127800 Rh1BG073700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AccBSI	CCGCTC	2 cut(s)	381, 1002
AccI	GTMKAC	2 cut(s)	413, 714
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	50, 381, 1002
AclI	AACGTT	1 cut(s)	299
AclWI	GGATC	2 cut(s)	631, 710
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	4 cut(s)	400, 440, 473, 529
AfiI	CCNNNNNNNGG	3 cut(s)	514, 588, 1017
AgsI	TTSAA	7 cut(s)	122, 274, 405, 617, 977, 1015, 1151
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	7 cut(s)	21, 505, 558, 608, 698, 749, 829
AluI	AGCT	7 cut(s)	21, 505, 558, 608, 698, 749, 829
Alw21I	GWGCWC	3 cut(s)	458, 523, 881
Alw26I	GTCTC	3 cut(s)	155, 276, 1040
Alw44I	GTGCAC	1 cut(s)	877
AlwI	GGATC	2 cut(s)	631, 710
AlwNI	CAGNNNCTG	2 cut(s)	21, 153
ApaLI	GTGCAC	1 cut(s)	877
ApeKI	GCWGC	5 cut(s)	15, 18, 21, 695, 1162
AspLEI	GCGC	2 cut(s)	26, 263
AspS9I	GGNCC	2 cut(s)	465, 1020
AsuHPI	GGTGA	2 cut(s)	364, 776
AsuNHI	GCTAGC	1 cut(s)	554
AvaII	GGWCC	2 cut(s)	465, 1020
AxyI	CCTNAGG	1 cut(s)	958
BaeGI	GKGCMC	1 cut(s)	881
BaeI	ACNNNNGTAYC	2 cut(s)	284, 317
BanII	GRGCYC	1 cut(s)	595
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	3 cut(s)	458, 523, 881
BbvI	GCAGC	5 cut(s)	8, 27, 30, 707, 1174
BccI	CCATC	2 cut(s)	389, 842
BclI	TGATCA	2 cut(s)	799, 1185
BcoDI	GTCTC	3 cut(s)	155, 276, 1040
BfaI	CTAG	4 cut(s)	555, 681, 699, 950
BfmI	CTRYAG	1 cut(s)	843
BisI	GCNGC	7 cut(s)	16, 19, 22, 51, 696, 1003, 1163
BlsI	GCNGC	7 cut(s)	17, 20, 23, 52, 697, 1004, 1164
Bme18I	GGWCC	2 cut(s)	465, 1020
BmgT120I	GGNCC	2 cut(s)	465, 1020
BmiI	GGNNCC	5 cut(s)	594, 916, 955, 1021, 1022
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	4 cut(s)	126, 252, 423, 899
BmtI	GCTAGC	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	163
BsaBI	GATNNNNATC	2 cut(s)	804, 1184
BsaHI	GRCGYC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	1040
BsaJI	CCNNGG	2 cut(s)	596, 910
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 273, 303
Bsc4I	CCNNNNNNNGG	3 cut(s)	514, 588, 1017
Bse1I	ACTGG	4 cut(s)	147, 518, 886, 1101
Bse21I	CCTNAGG	1 cut(s)	958
Bse8I	GATNNNNATC	2 cut(s)	804, 1184
BseDI	CCNNGG	2 cut(s)	596, 910
BseGI	GGATG	2 cut(s)	890, 1105
BseJI	GATNNNNATC	2 cut(s)	804, 1184
BseLI	CCNNNNNNNGG	3 cut(s)	514, 588, 1017
BseMII	CTCAG	1 cut(s)	972
BseNI	ACTGG	4 cut(s)	147, 518, 886, 1101
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	5 cut(s)	8, 27, 30, 707, 1174
BsgI	GTGCAG	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	207
BsiHKAI	GWGCWC	3 cut(s)	458, 523, 881
BsiSI	CCGG	1 cut(s)	582
BslFI	GGGAC	2 cut(s)	532, 1006
BslI	CCNNNNNNNGG	3 cut(s)	514, 588, 1017
BsmAI	GTCTC	3 cut(s)	155, 276, 1040
BsmFI	GGGAC	2 cut(s)	532, 1006
BsmI	GAATGC	3 cut(s)	317, 326, 690
Bso31I	GGTCTC	1 cut(s)	1040
Bsp1286I	GDGCHC	4 cut(s)	458, 523, 595, 881
Bsp143I	GATC	5 cut(s)	623, 702, 799, 805, 1185
BspACI	CCGC	3 cut(s)	50, 381, 1002
BspCNI	CTCAG	1 cut(s)	971
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	2 cut(s)	808, 1114
BspLI	GGNNCC	5 cut(s)	594, 916, 955, 1021, 1022
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	2 cut(s)	631, 710
BspTNI	GGTCTC	1 cut(s)	1040
BsrBI	CCGCTC	2 cut(s)	381, 1002
BsrI	ACTGG	4 cut(s)	147, 518, 886, 1101
BssECI	CCNNGG	2 cut(s)	596, 910
BssMI	GATC	5 cut(s)	623, 702, 799, 805, 1185
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	596, 910
Bst4CI	ACNGT	3 cut(s)	418, 631, 973
Bst6I	CTCTTC	2 cut(s)	69, 84
BstACI	GRCGYC	1 cut(s)	225
BstAPI	GCANNNNNTGC	2 cut(s)	21, 433
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	3 cut(s)	609, 825, 958
BstF5I	GGATG	2 cut(s)	890, 1105
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	26, 263
BstKTI	GATC	5 cut(s)	626, 705, 802, 808, 1188
BstMAI	GTCTC	3 cut(s)	155, 276, 1040
BstMBI	GATC	5 cut(s)	623, 702, 799, 805, 1185
BstMWI	GCNNNNNNNGC	7 cut(s)	21, 321, 330, 339, 433, 876, 914
BstNSI	RCATGY	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	843
BstSLI	GKGCMC	1 cut(s)	881
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	5 cut(s)	8, 27, 30, 707, 1174
BstV2I	GAAGAC	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	925
Bsu36I	CCTNAGG	1 cut(s)	958
BtsCI	GGATG	2 cut(s)	890, 1105
BtsIMutI	CAGTG	2 cut(s)	159, 879
Cac8I	GCNNGC	1 cut(s)	556
CaiI	CAGNNNCTG	2 cut(s)	21, 153
CciI	TCATGA	2 cut(s)	808, 1114
CfoI	GCGC	2 cut(s)	26, 263
Cfr13I	GGNCC	2 cut(s)	465, 1020
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	4 cut(s)	399, 439, 472, 528
CviQI	GTAC	4 cut(s)	399, 439, 472, 528
DdeI	CTNAG	3 cut(s)	609, 825, 958
DpnI	GATC	5 cut(s)	625, 704, 801, 807, 1187
DpnII	GATC	5 cut(s)	623, 702, 799, 805, 1185
Eam1104I	CTCTTC	2 cut(s)	69, 84
EarI	CTCTTC	2 cut(s)	69, 84
Eco130I	CCWWGG	2 cut(s)	596, 910
Eco24I	GRGCYC	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	1040
Eco47I	GGWCC	2 cut(s)	465, 1020
Eco81I	CCTNAGG	1 cut(s)	958
EcoO109I	RGGNCCY	1 cut(s)	1020
EcoT14I	CCWWGG	2 cut(s)	596, 910
EcoT22I	ATGCAT	1 cut(s)	1079
EcoT38I	GRGCYC	1 cut(s)	595
ErhI	CCWWGG	2 cut(s)	596, 910
FaqI	GGGAC	2 cut(s)	532, 1006
FbaI	TGATCA	2 cut(s)	799, 1185
FblI	GTMKAC	2 cut(s)	413, 714
Fnu4HI	GCNGC	7 cut(s)	16, 19, 22, 51, 696, 1003, 1163
FokI	GGATG	2 cut(s)	877, 1112
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	7 cut(s)	16, 19, 22, 51, 696, 1003, 1163
FspBI	CTAG	4 cut(s)	555, 681, 699, 950
GlaI	GCGC	2 cut(s)	25, 262
GluI	GCNGC	7 cut(s)	16, 19, 22, 51, 696, 1003, 1163
HapII	CCGG	1 cut(s)	582
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	2 cut(s)	26, 263
Hin1I	GRCGYC	1 cut(s)	225
Hin6I	GCGC	2 cut(s)	24, 261
HinP1I	GCGC	2 cut(s)	24, 261
HincII	GTYRAC	2 cut(s)	414, 715
HindII	GTYRAC	2 cut(s)	414, 715
HinfI	GANTC	4 cut(s)	573, 839, 1111, 1180
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	2 cut(s)	364, 776
Hpy166II	GTNNAC	4 cut(s)	372, 414, 715, 879
Hpy188I	TCNGA	5 cut(s)	248, 310, 469, 793, 1185
Hpy188III	TCNNGA	8 cut(s)	133, 289, 405, 803, 809, 1108, 1115, 1189
Hpy8I	GTNNAC	4 cut(s)	372, 414, 715, 879
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	595, 904, 1064
HpyCH4III	ACNGT	3 cut(s)	418, 631, 973
HpyCH4IV	ACGT	2 cut(s)	299, 486
HpyCH4V	TGCA	8 cut(s)	45, 81, 688, 695, 879, 890, 1077, 1093
HpyF10VI	GCNNNNNNNGC	7 cut(s)	21, 321, 330, 339, 433, 876, 914
HpyF3I	CTNAG	3 cut(s)	609, 825, 958
HpySE526I	ACGT	2 cut(s)	299, 486
Hsp92I	GRCGYC	1 cut(s)	225
HspAI	GCGC	2 cut(s)	24, 261
KflI	GGGWCCC	1 cut(s)	1020
Ksp22I	TGATCA	2 cut(s)	799, 1185
Kzo9I	GATC	5 cut(s)	623, 702, 799, 805, 1185
LmnI	GCTCC	5 cut(s)	461, 510, 598, 914, 953
Lsp1109I	GCAGC	5 cut(s)	8, 27, 30, 707, 1174
LweI	GCATC	4 cut(s)	126, 252, 423, 899
MaeI	CTAG	4 cut(s)	555, 681, 699, 950
MaeII	ACGT	2 cut(s)	299, 486
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	5 cut(s)	625, 704, 801, 807, 1187
MbiI	CCGCTC	2 cut(s)	381, 1002
MboI	GATC	5 cut(s)	623, 702, 799, 805, 1185
MboII	GAAGA	5 cut(s)	86, 101, 163, 263, 1189
MhlI	GDGCHC	4 cut(s)	458, 523, 595, 881
MluCI	AATT	4 cut(s)	189, 328, 490, 978
MlyI	GAGTC	2 cut(s)	833, 1105
MmeI	TCCRAC	2 cut(s)	372, 637
Mph1103I	ATGCAT	1 cut(s)	1079
MseI	TTAA	3 cut(s)	483, 1137, 1157
MslI	CAYNNNNRTG	3 cut(s)	807, 923, 1082
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	1 cut(s)	582
Mva1269I	GAATGC	3 cut(s)	317, 326, 690
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	7 cut(s)	21, 321, 330, 339, 433, 876, 914
NdeII	GATC	5 cut(s)	623, 702, 799, 805, 1185
NheI	GCTAGC	1 cut(s)	554
NlaIV	GGNNCC	5 cut(s)	594, 916, 955, 1021, 1022
NmuCI	GTSAC	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	1079
NspI	RCATGY	1 cut(s)	45
PagI	TCATGA	2 cut(s)	808, 1114
PctI	GAATGC	3 cut(s)	317, 326, 690
PfeI	GAWTC	2 cut(s)	573, 1180
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	7 cut(s)	17, 20, 23, 52, 697, 1004, 1164
PleI	GAGTC	2 cut(s)	833, 1105
PpsI	GAGTC	2 cut(s)	833, 1105
PpuMI	RGGWCCY	1 cut(s)	1020
PsiI	TTATAA	1 cut(s)	770
Psp1406I	AACGTT	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	1020
PspN4I	GGNNCC	5 cut(s)	594, 916, 955, 1021, 1022
PspPI	GGNCC	2 cut(s)	465, 1020
PspPPI	RGGWCCY	1 cut(s)	1020
PsrI	GAACNNNNNNTAC	2 cut(s)	957, 989
PstNI	CAGNNNCTG	2 cut(s)	21, 153
PsyI	GACNNNGTC	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	21
RsaI	GTAC	4 cut(s)	400, 440, 473, 529
RsaNI	GTAC	4 cut(s)	399, 439, 472, 528
RseI	CAYNNNNRTG	3 cut(s)	807, 923, 1082
SalI	GTCGAC	2 cut(s)	412, 713
SaqAI	TTAA	3 cut(s)	483, 1137, 1157
SatI	GCNGC	7 cut(s)	16, 19, 22, 51, 696, 1003, 1163
Sau3AI	GATC	5 cut(s)	623, 702, 799, 805, 1185
Sau96I	GGNCC	2 cut(s)	465, 1020
SchI	GAGTC	2 cut(s)	833, 1105
SduI	GDGCHC	4 cut(s)	458, 523, 595, 881
SfaNI	GCATC	4 cut(s)	126, 252, 423, 899
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	2 cut(s)	465, 1020
SmiMI	CAYNNNNRTG	3 cut(s)	807, 923, 1082
Sse9I	AATT	4 cut(s)	189, 328, 490, 978
SsiI	CCGC	3 cut(s)	50, 381, 1002
SspMI	CTAG	4 cut(s)	555, 681, 699, 950
StyI	CCWWGG	2 cut(s)	596, 910
TaaI	ACNGT	3 cut(s)	418, 631, 973
TaiI	ACGT	2 cut(s)	302, 489
TaqI	TCGA	3 cut(s)	393, 413, 714
TasI	AATT	4 cut(s)	189, 328, 490, 978
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	2 cut(s)	53, 1005
TfiI	GAWTC	2 cut(s)	573, 1180
Tru1I	TTAA	3 cut(s)	483, 1137, 1157
Tru9I	TTAA	3 cut(s)	483, 1137, 1157
TscAI	CASTG	2 cut(s)	166, 886
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	5 cut(s)	15, 18, 21, 695, 1162
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	6 cut(s)	743, 886, 918, 1094, 1116, 1131
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	166, 886
Tth111I	GACNNNGTC	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	877
VpaK11BI	GGWCC	2 cut(s)	465, 1020
XceI	RCATGY	1 cut(s)	45
XmiI	GTMKAC	2 cut(s)	413, 714
XspI	CTAG	4 cut(s)	555, 681, 699, 950
Zsp2I	ATGCAT	1 cut(s)	1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.