Rh1AG011700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0020507
Physical Location & Seq
Forward (+)
1984576 .. 1988705
4130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG011700.1

Sequence Viewer

Length: 261 bp
ATGGGATCATCGTCTTCATCCAAAACCCATTGCAGTGCTGCAAGATTCACCATGGCCAATTGGCAAACGACTGCCTCCTTAACTGCGGCTCTTCCTCCAACGCCACCTTCTTCAACGACTTCTTTATCGGAGATTTCAATTCCGGCTCGGGTTTGTCTTCAACAACAAAATCCCACCTCCAAACTCACCCTCTCCTTACCACACACCACTGCTTCAAGCTATAGCTTAAGCATCAGGAAAATTGGAACTCACTTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.05

Weight (kDa)

10.06

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020507)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0116841 RchiOBHm_Chr7g0193281
rosa_rugosa Rorug01G0074100
rosa_samantha Rh1AG011700 Rh1AG127800 Rh1BG073700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 54
AflII CTTAAG 1 cut(s) 226
AgsI TTSAA 4 cut(s) 114, 138, 161, 216
AjuI GAANNNNNNNTTGG 2 cut(s) 91, 123
AluBI AGCT 2 cut(s) 219, 225
AluI AGCT 2 cut(s) 219, 225
AlwI GGATC 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 40, 178
AvaI CYCGRG 1 cut(s) 147
BalI TGGCCA 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 6, 149
BbvI GCAGC 1 cut(s) 25
BfmI CTRYAG 1 cut(s) 220
BfrI CTTAAG 1 cut(s) 226
BisI GCNGC 2 cut(s) 39, 87
BlsI GCNGC 2 cut(s) 40, 88
BmeT110I CYCGRG 1 cut(s) 147
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 2 cut(s) 6, 149
BsaJI CCNNGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 143
BsnI GGCC 1 cut(s) 56
BsoBI CYCGRG 1 cut(s) 147
Bsp143I GATC 1 cut(s) 5
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 56
BspPI GGATC 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 96
BspTI CTTAAG 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 96
BstAFI CTTAAG 1 cut(s) 226
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 17
BstKTI GATC 1 cut(s) 8
BstMBI GATC 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 2 cut(s) 6, 149
BsuRI GGCC 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 17
BtsI GCAGTG 2 cut(s) 40, 207
BtsIMutI CAGTG 2 cut(s) 40, 207
CviAII CATG 1 cut(s) 52
CviJI RGCY 5 cut(s) 56, 89, 146, 219, 225
CviKI_1 RGCY 5 cut(s) 56, 89, 146, 219, 225
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 55
FaiI YATR 2 cut(s) 53, 222
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 39, 87
FokI GGATG 1 cut(s) 4
Fsp4HI GCNGC 2 cut(s) 39, 87
GluI GCNGC 2 cut(s) 39, 87
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 143
Hin1II CATG 1 cut(s) 55
HinfI GANTC 1 cut(s) 45
HpaII CCGG 1 cut(s) 143
HphI GGTGA 2 cut(s) 40, 178
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 33, 41
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 1 cut(s) 5
LguI GCTCTTC 1 cut(s) 96
LpnPI CCDG 2 cut(s) 156, 220
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 240
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 4 cut(s) 6, 83, 102, 149
MfeI CAATTG 1 cut(s) 58
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 3 cut(s) 58, 138, 240
MluNI TGGCCA 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 4 cut(s) 85, 105, 187, 200
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 2 cut(s) 80, 227
MslI CAYNNNNRTG 1 cut(s) 33
Msp20I TGGCCA 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 226
MspI CCGG 1 cut(s) 143
MunI CAATTG 1 cut(s) 58
NcoI CCATGG 1 cut(s) 51
NdeII GATC 1 cut(s) 5
NlaIII CATG 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 45
PkrI GCNGC 2 cut(s) 40, 88
RseI CAYNNNNRTG 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 80, 227
SatI GCNGC 2 cut(s) 39, 87
Sau3AI GATC 1 cut(s) 5
SetI ASST 4 cut(s) 109, 179, 221, 227
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 220
SgeI CNNG 7 cut(s) 54, 64, 155, 159, 161, 228, 247
SmiMI CAYNNNNRTG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 3 cut(s) 58, 138, 240
SsiI CCGC 1 cut(s) 86
StyI CCWWGG 1 cut(s) 51
TasI AATT 3 cut(s) 58, 138, 240
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 2 cut(s) 80, 227
Tru9I TTAA 2 cut(s) 80, 227
TscAI CASTG 2 cut(s) 40, 214
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 6
TspRI CASTG 2 cut(s) 40, 214
Vha464I CTTAAG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.