Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022671

Physical Location & Seq

Genomic Coordinates Reverse (-)

64182061 .. 64182571

Gene Structure 511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51626

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCATCTGAACCCGTAAATGTCAACGAATTCCAAGAATTGGATAAGCAAGTCCTTCCAAAAATGTACTATGATTTCTATACTGGGGGAGCTGAGGACCGGTTCACGCTAAAAGAGAATGTTGAAGCATTTTGCAGAATTATATTAAGGCCTAGAGTTCTGGCAAATGTTAGCTGGATCGATATGTCAACCACTGTATTGGGTTACAAAATCTCAGCGCCTATAATGATTGCTCCTACTTCTAGGCATCAGTTAGCACACCCTGAAGGTCTAATTTGTCTCACAAGAGTTTCAGTTAAGATTGGTGAATTTCAGACATTAAGTTTTTACTTGCTCTTTCAGGAGAGGTGGCTACTTTTAGAGCAGCAGCTGCATCCAACACTATACTATAATGGTATTTATATCAAATTTATTGAATTCACATGTAACTGGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

145

Amino Acids

16.96

Weight (kDa)

5.9

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	16 - 108	1.7e-23	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0022671)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146541
rosa_laevigata	RLG00000020204
rosa_samantha	Rh2CG438200 Rh2DG473100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	4 cut(s)	29, 308, 407, 416
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	422
AgeI	ACCGGT	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	125, 416
AluBI	AGCT	3 cut(s)	92, 174, 370
AluI	AGCT	3 cut(s)	92, 174, 370
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	370
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	364, 367, 370
ApoI	RAATTY	4 cut(s)	29, 308, 407, 416
AsiGI	ACCGGT	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	97
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	357, 376, 379
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	2 cut(s)	153, 243
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	3 cut(s)	365, 368, 371
BlsI	GCNGC	3 cut(s)	366, 369, 372
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	3 cut(s)	14, 256, 382
BmuI	ACTGGG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	2 cut(s)	88, 434
BseCI	ATCGAT	1 cut(s)	180
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	84, 228
BseNI	ACTGG	2 cut(s)	88, 434
BseXI	GCAGC	3 cut(s)	357, 376, 379
BshFI	GGCC	1 cut(s)	151
BshTI	ACCGGT	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	2 cut(s)	85, 227
BspDI	ATCGAT	1 cut(s)	180
BspPI	GGATC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	88, 434
BssAI	RCCGGY	1 cut(s)	99
BssMI	GATC	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	93, 214
BstF5I	GGATG	1 cut(s)	373
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	357, 376, 379
BstXI	CCANNNNNNTGG	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	151
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	370
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	67
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	1 cut(s)	423
CviJI	RGCY	5 cut(s)	92, 151, 174, 352, 370
CviKI_1	RGCY	5 cut(s)	92, 151, 174, 352, 370
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	93, 214
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	285
EcoRI	GAATTC	2 cut(s)	29, 416
FaeI	CATG	1 cut(s)	426
FaiI	YATR	9 cut(s)	72, 81, 143, 185, 224, 385, 390, 402, 424
FatI	CATG	1 cut(s)	422
Fnu4HI	GCNGC	3 cut(s)	365, 368, 371
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	3 cut(s)	365, 368, 371
FspBI	CTAG	2 cut(s)	153, 243
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	3 cut(s)	365, 368, 371
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	1 cut(s)	100
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	426
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	2 cut(s)	25, 189
HindII	GTYRAC	2 cut(s)	25, 189
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	3 cut(s)	25, 105, 189
Hpy188I	TCNGA	2 cut(s)	10, 315
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	3 cut(s)	25, 105, 189
HpyAV	CCTTC	2 cut(s)	65, 260
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	135, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	2 cut(s)	93, 214
Hsp92II	CATG	1 cut(s)	426
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	89, 238
LpnPI	CCDG	7 cut(s)	69, 113, 146, 160, 276, 326, 415
Lsp1109I	GCAGC	3 cut(s)	357, 376, 379
LweI	GCATC	3 cut(s)	14, 256, 382
MaeI	CTAG	2 cut(s)	153, 243
MaeIII	GTNAC	2 cut(s)	203, 425
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MluCI	AATT	7 cut(s)	29, 38, 138, 273, 308, 407, 416
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	2 cut(s)	88, 339
MseI	TTAA	3 cut(s)	146, 297, 320
MspA1I	CMGCKG	1 cut(s)	370
MspI	CCGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	426
NspI	RCATGY	1 cut(s)	426
PceI	AGGCCT	1 cut(s)	151
PciI	ACATGT	1 cut(s)	422
PflMI	CCANNNNNTGG	1 cut(s)	40
PinAI	ACCGGT	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	366, 369, 372
PscI	ACATGT	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	370
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	146, 297, 320
SatI	GCNGC	3 cut(s)	365, 368, 371
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	97
SetI	ASST	5 cut(s)	94, 176, 271, 350, 372
SfaNI	GCATC	3 cut(s)	14, 256, 382
SinI	GGWCC	1 cut(s)	97
Sse9I	AATT	7 cut(s)	29, 38, 138, 273, 308, 407, 416
SseBI	AGGCCT	1 cut(s)	151
SspMI	CTAG	2 cut(s)	153, 243
StuI	AGGCCT	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	180
TasI	AATT	7 cut(s)	29, 38, 138, 273, 308, 407, 416
TatI	WGTACW	1 cut(s)	66
Tru1I	TTAA	3 cut(s)	146, 297, 320
Tru9I	TTAA	3 cut(s)	146, 297, 320
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	3 cut(s)	364, 367, 370
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	4 cut(s)	29, 308, 407, 416
XceI	RCATGY	1 cut(s)	426
XspI	CTAG	2 cut(s)	153, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.