Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0022671

Physical Location & Seq

Genomic Coordinates Reverse (-)

62425009 .. 62425938

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020204

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCATCTAAACCTTTAAATGTCAATGAATTCCAAGAATTGGCTAAGCAAGTCCTTCCAAAAATGTACTATGATTTCTATACTGGGGGAGCTGAGGACCAGTTCACGCTAAAAGAATTAAGGCCTAGAGTTCTGGTAGATGTTAGCAGGATCGATTTGTCAACCACTGTATTGGGTTACAAAATCTCAGCGGCTATAATGATTGCTCCTACTTCTAGGCATCAGTTAGCACACCCTGAAGGTCTAATTTGTCTCACAAGAGTTTCAGTTAAGATGGGTGAATTTCAGACAATAAGTTTTGCTCTTTCAGGAGAGGTGGCCACTGCTAGAGTAGCAGCTGCATCCAACACTATAATGATTTTTTCCTACATGTCTACCTGCACTGTGGAGGAGGTTGCTTCGAGCTGCAATGTTGTTCGGTTCTTGCAATTATATGTTTACAAGAGACAAGATATATCGGCTCAGATCGTTCAGTTTCGTAAACCTTCGTCTCTATCGTTGACCATCGTTCAGCTTCGTCAACCTTCGTCTGCTGCCGTTGACCATCATTCACTATTTGGAAAAGATAAACTCATTCTTCACCTATGGCAACATTTCATCAACAGTAGTCGCCTATCGTTAAGTATCGTCAACTTCTGTCAACAATTTCATCACCATCATCAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

223

Amino Acids

25.03

Weight (kDa)

9.08

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	15 - 99	2.1e-15	FMN-dependent dehydrogenase
FMN_dh	PF01070	103 - 158	2.5e-09	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022671)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146541
rosa_laevigata	RLG00000020204
rosa_samantha	Rh2CG438200 Rh2DG473100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	374
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	2 cut(s)	29, 281
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	369
AluBI	AGCT	4 cut(s)	92, 338, 405, 514
AluI	AGCT	4 cut(s)	92, 338, 405, 514
Alw26I	GTCTC	3 cut(s)	257, 439, 495
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	2 cut(s)	122, 318
ApeKI	GCWGC	4 cut(s)	335, 338, 405, 533
ApoI	RAATTY	2 cut(s)	29, 281
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	3 cut(s)	290, 572, 644
AvaII	GGWCC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	4 cut(s)	325, 347, 392, 520
BccI	CCATC	4 cut(s)	268, 512, 552, 663
BceAI	ACGGC	1 cut(s)	521
BcoDI	GTCTC	3 cut(s)	257, 439, 495
BfaI	CTAG	3 cut(s)	126, 216, 327
BfuAI	ACCTGC	1 cut(s)	386
BisI	GCNGC	5 cut(s)	192, 336, 339, 406, 534
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	5 cut(s)	193, 337, 340, 407, 535
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	3 cut(s)	14, 229, 350
BmuI	ACTGGG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	88, 100
Bse3DI	GCAATG	1 cut(s)	415
BseCI	ATCGAT	1 cut(s)	153
BseGI	GGATG	1 cut(s)	341
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	3 cut(s)	84, 201, 476
BseNI	ACTGG	2 cut(s)	88, 100
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	4 cut(s)	325, 347, 392, 520
BsgI	GTGCAG	1 cut(s)	364
BshFI	GGCC	2 cut(s)	124, 320
BshVI	ATCGAT	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	3 cut(s)	257, 439, 495
BsmBI	CGTCTC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	124, 320
Bsp143I	GATC	2 cut(s)	150, 465
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	2 cut(s)	124, 320
BspCNI	CTCAG	3 cut(s)	85, 200, 475
BspDI	ATCGAT	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	88, 100
BssMI	GATC	2 cut(s)	150, 465
Bst4CI	ACNGT	3 cut(s)	169, 385, 605
BstDEI	CTNAG	4 cut(s)	45, 93, 187, 462
BstF5I	GGATG	1 cut(s)	341
BstKTI	GATC	2 cut(s)	153, 468
BstMAI	GTCTC	3 cut(s)	257, 439, 495
BstMBI	GATC	2 cut(s)	150, 465
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	373
BstV1I	GCAGC	4 cut(s)	325, 347, 392, 520
BstXI	CCANNNNNNTGG	1 cut(s)	172
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	124, 320
BsuTUI	ATCGAT	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	341
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	3 cut(s)	165, 321, 381
BveI	ACCTGC	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	9 cut(s)	44, 92, 124, 194, 320, 338, 405, 461, 514
CviKI_1	RGCY	9 cut(s)	44, 92, 124, 194, 320, 338, 405, 461, 514
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	4 cut(s)	45, 93, 187, 462
DpnI	GATC	2 cut(s)	152, 467
DpnII	GATC	2 cut(s)	150, 465
DraI	TTTAAA	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	495
FaeI	CATG	1 cut(s)	373
FatI	CATG	1 cut(s)	369
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	5 cut(s)	192, 336, 339, 406, 534
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	5 cut(s)	192, 336, 339, 406, 534
FspBI	CTAG	3 cut(s)	126, 216, 327
GluI	GCNGC	5 cut(s)	192, 336, 339, 406, 534
HaeIII	GGCC	2 cut(s)	124, 320
Hin1II	CATG	1 cut(s)	373
HincII	GTYRAC	6 cut(s)	162, 501, 521, 541, 631, 641
HindII	GTYRAC	6 cut(s)	162, 501, 521, 541, 631, 641
HphI	GGTGA	3 cut(s)	290, 572, 644
Hpy188I	TCNGA	2 cut(s)	288, 465
Hpy188III	TCNNGA	1 cut(s)	309
HpyAV	CCTTC	4 cut(s)	65, 233, 495, 534
HpyCH4III	ACNGT	3 cut(s)	169, 385, 605
HpyCH4V	TGCA	4 cut(s)	341, 381, 408, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	4 cut(s)	45, 93, 187, 462
Hsp92II	CATG	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	150, 465
LmnI	GCTCC	2 cut(s)	89, 211
LpnPI	CCDG	7 cut(s)	69, 113, 119, 133, 249, 294, 391
Lsp1109I	GCAGC	4 cut(s)	325, 347, 392, 520
LweI	GCATC	3 cut(s)	14, 229, 350
MaeI	CTAG	3 cut(s)	126, 216, 327
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	2 cut(s)	152, 467
MboI	GATC	2 cut(s)	150, 465
MboII	GAAGA	1 cut(s)	569
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	7 cut(s)	29, 38, 116, 246, 281, 428, 644
MluNI	TGGCCA	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	4 cut(s)	88, 307, 382, 385
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	4 cut(s)	17, 119, 270, 620
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	2 cut(s)	191, 338
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	2 cut(s)	150, 465
NlaIII	CATG	1 cut(s)	373
NspI	RCATGY	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	124
PciI	ACATGT	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	5 cut(s)	193, 337, 340, 407, 535
PscI	ACATGT	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	97
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	4 cut(s)	17, 119, 270, 620
SatI	GCNGC	5 cut(s)	192, 336, 339, 406, 534
Sau3AI	GATC	2 cut(s)	150, 465
Sau96I	GGNCC	1 cut(s)	97
SfaNI	GCATC	3 cut(s)	14, 229, 350
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	7 cut(s)	29, 38, 116, 246, 281, 428, 644
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	3 cut(s)	126, 216, 327
StuI	AGGCCT	1 cut(s)	124
TaaI	ACNGT	3 cut(s)	169, 385, 605
TaqI	TCGA	2 cut(s)	153, 401
TasI	AATT	7 cut(s)	29, 38, 116, 246, 281, 428, 644
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	194
Tru1I	TTAA	4 cut(s)	17, 119, 270, 620
Tru9I	TTAA	4 cut(s)	17, 119, 270, 620
TscAI	CASTG	3 cut(s)	172, 328, 388
TseI	GCWGC	4 cut(s)	335, 338, 405, 533
TspDTI	ATGAA	3 cut(s)	42, 586, 638
TspRI	CASTG	3 cut(s)	172, 328, 388
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	2 cut(s)	29, 281
XceI	RCATGY	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	374
XspI	CTAG	3 cut(s)	126, 216, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.