Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0022671

Physical Location & Seq

Genomic Coordinates Reverse (-)

59501744 .. 59502213

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG438200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCATCTGAACCTGTCAATGTGAATGAATTCCAAGAATTGGCTAGGCAAGTACTTCCAAAAATGTACTATGATTACTATAGTGGGGGAGCCGAGGACCAATTCACGCTAAAGGAGAATGTTGAAGCATTTCGCAAAATCACGTTAAGGCCTAGAGTTCTTGTAGATGTTAGCAGAATCTATATGTCAACCACTATATTGGGTTACAAAATCTCAGCACCTATAATGATTGCTCCTAGTGCTATGCATCAGTTAGCACACCCTGAAGGTCTAATTTGTTATGCAAGAGTTTCTGTTGAGATTGCTGAATTTCGGACACTAAATTTGTACCTGCTCTTTCAGGAGAGGTCGCTACTGCTAGAGCAGCAGCTGCATCCAATACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

128

Amino Acids

14.75

Weight (kDa)

5.89

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	15 - 97	2.5e-26	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022671)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146541
rosa_laevigata	RLG00000020204
rosa_samantha	Rh2CG438200 Rh2DG473100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	339
AccB7I	CCANNNNNTGG	1 cut(s)	40
AcsI	RAATTY	3 cut(s)	29, 308, 322
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	3 cut(s)	54, 68, 329
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
AlwNI	CAGNNNCTG	1 cut(s)	370
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	364, 367, 370
ApoI	RAATTY	3 cut(s)	29, 308, 322
ArsI	GACNNNNNNTTYG	2 cut(s)	307, 339
Asp700I	GAANNNNTTC	2 cut(s)	29, 129
AspS9I	GGNCC	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	97
BbvI	GCAGC	3 cut(s)	357, 376, 379
BfaI	CTAG	4 cut(s)	45, 153, 237, 359
BfmI	CTRYAG	1 cut(s)	79
BfuAI	ACCTGC	1 cut(s)	339
BisI	GCNGC	3 cut(s)	365, 368, 371
BlsI	GCNGC	3 cut(s)	366, 369, 372
BmcAI	AGTACT	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	3 cut(s)	14, 256, 382
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	228
BseXI	GCAGC	3 cut(s)	357, 376, 379
BshFI	GGCC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	40
BsnI	GGCC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 364, 370
BstSFI	CTRYAG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	357, 376, 379
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	373
BveI	ACCTGC	1 cut(s)	339
CaiI	CAGNNNCTG	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	97
Csp6I	GTAC	3 cut(s)	53, 67, 328
CviJI	RGCY	4 cut(s)	44, 92, 151, 370
CviKI_1	RGCY	4 cut(s)	44, 92, 151, 370
CviQI	GTAC	3 cut(s)	53, 67, 328
DdeI	CTNAG	1 cut(s)	214
Eco147I	AGGCCT	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	29
EcoT22I	ATGCAT	1 cut(s)	249
FaiI	YATR	9 cut(s)	72, 81, 183, 185, 197, 224, 245, 282, 385
Fnu4HI	GCNGC	3 cut(s)	365, 368, 371
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	3 cut(s)	365, 368, 371
FspBI	CTAG	4 cut(s)	45, 153, 237, 359
GluI	GCNGC	3 cut(s)	365, 368, 371
HaeIII	GGCC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	2 cut(s)	10, 315
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	1 cut(s)	189
HpyAV	CCTTC	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	247, 284, 373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 364, 370
HpyF3I	CTNAG	1 cut(s)	214
HpySE526I	ACGT	1 cut(s)	143
LmnI	GCTCC	2 cut(s)	89, 238
LpnPI	CCDG	4 cut(s)	27, 276, 326, 344
Lsp1109I	GCAGC	3 cut(s)	357, 376, 379
LweI	GCATC	3 cut(s)	14, 256, 382
MaeI	CTAG	4 cut(s)	45, 153, 237, 359
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	203
MluCI	AATT	6 cut(s)	29, 38, 101, 273, 308, 322
MnlI	CCTC	2 cut(s)	88, 339
Mph1103I	ATGCAT	1 cut(s)	249
MroXI	GAANNNNTTC	2 cut(s)	29, 129
MseI	TTAA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	370
MwoI	GCNNNNNNNGC	3 cut(s)	239, 364, 370
NlaIV	GGNNCC	1 cut(s)	91
NmeAIII	GCCGAG	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	151
PdmI	GAANNNNTTC	2 cut(s)	29, 129
PfeI	GAWTC	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	366, 369, 372
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	370
RsaI	GTAC	3 cut(s)	54, 68, 329
RsaNI	GTAC	3 cut(s)	53, 67, 328
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	3 cut(s)	365, 368, 371
Sau96I	GGNCC	1 cut(s)	97
ScaI	AGTACT	1 cut(s)	54
SetI	ASST	7 cut(s)	16, 146, 223, 271, 333, 350, 372
SfaNI	GCATC	3 cut(s)	14, 256, 382
SfcI	CTRYAG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	97
Sse9I	AATT	6 cut(s)	29, 38, 101, 273, 308, 322
SseBI	AGGCCT	1 cut(s)	151
SspMI	CTAG	4 cut(s)	45, 153, 237, 359
StuI	AGGCCT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	146
TasI	AATT	6 cut(s)	29, 38, 101, 273, 308, 322
TatI	WGTACW	2 cut(s)	52, 66
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TseI	GCWGC	3 cut(s)	364, 367, 370
TspDTI	ATGAA	1 cut(s)	42
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	3 cut(s)	29, 308, 322
XmnI	GAANNNNTTC	2 cut(s)	29, 129
XspI	CTAG	4 cut(s)	45, 153, 237, 359
ZrmI	AGTACT	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.