Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0022671

Physical Location & Seq

Genomic Coordinates Reverse (-)

68482847 .. 68484084

Gene Structure 1238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG473100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCATCTGAACCTGTAAATGTCAATGAATTCCAAGAATTGGCTAAGCAAGTCCTTCCAAAAATGTACTATGATTTCTATACTGGGGGAGCTGAGGACCAGTTCACGCTAAAAGAGAATGTTGAAGCATTTCGCAGAATCACATTAAGGCCTAGAGTTCTGGTAGATGTTAGCAGGATCGATATGTCAACCACTGTATTGGGTTACAAAATCTCAGCACCTATAATGATTGCTCCTACTTCTAGGCATCAGTTAGCACACCCTGAAGGAGAGGTGGCTACTGCTAGAGCTGCAGCTGCATCCAACACTATAATGATTTTGTCCTACTCTTCTACCTGCACTGTGGAGGAGGTTGCTTCGAGCTGCAATGCTGTTCGGTTCTTTCAATTATATGTTTGCAAGAGACGGGATATATCTGCTCAGATAGTTCAAAGAGCTGAAAAAAATGGGTACAAGGCTATTGTACTAACTGTCGATGCTCCCAGACTTGGTAGAAGAGAGGCAGACATAAAGAACAAGATGAAGGATCCAACTTGGAAGCTTATGTCAGAGCGGTCTATGATGATTCTTTGTGCTGGGAGGTATAAGTCAGCATACCCTACTGATCATATGCTCTTATGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

208

Amino Acids

23.49

Weight (kDa)

9.08

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	15 - 179	1.2e-58	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0022671)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146541
rosa_laevigata	RLG00000020204
rosa_samantha	Rh2CG438200 Rh2DG473100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	344
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	553
AciI	CCGC	1 cut(s)	553
AclWI	GGATC	3 cut(s)	185, 521, 534
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	3 cut(s)	68, 452, 465
AfiI	CCNNNNNNNGG	2 cut(s)	40, 488
AgsI	TTSAA	3 cut(s)	125, 386, 431
AluBI	AGCT	6 cut(s)	92, 290, 296, 363, 437, 541
AluI	AGCT	6 cut(s)	92, 290, 296, 363, 437, 541
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	3 cut(s)	185, 521, 534
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	4 cut(s)	290, 293, 296, 363
ApoI	RAATTY	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	526
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	4 cut(s)	277, 283, 305, 350
BclI	TGATCA	1 cut(s)	604
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	4 cut(s)	153, 243, 285, 625
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	344
BisI	GCNGC	4 cut(s)	291, 294, 297, 364
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	4 cut(s)	292, 295, 298, 365
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	4 cut(s)	14, 256, 308, 466
BmuI	ACTGGG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 488
Bse1I	ACTGG	2 cut(s)	88, 100
Bse3DI	GCAATG	1 cut(s)	373
BseCI	ATCGAT	1 cut(s)	180
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	40, 488
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	3 cut(s)	84, 228, 434
BseNI	ACTGG	2 cut(s)	88, 100
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	277, 283, 305, 350
BseYI	CCCAGC	1 cut(s)	575
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	151
BshVI	ATCGAT	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	40, 488
BsmAI	GTCTC	1 cut(s)	397
BsmBI	CGTCTC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	177, 526, 604
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	553
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	3 cut(s)	85, 227, 433
BspDI	ATCGAT	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	528
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	3 cut(s)	185, 521, 534
BsrBI	CCGCTC	1 cut(s)	553
BsrDI	GCAATG	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	88, 100
BssMI	GATC	3 cut(s)	177, 526, 604
Bst4CI	ACNGT	3 cut(s)	196, 343, 472
Bst6I	CTCTTC	2 cut(s)	334, 490
BstDEI	CTNAG	4 cut(s)	45, 93, 214, 420
BstF5I	GGATG	1 cut(s)	299
BstKTI	GATC	3 cut(s)	180, 529, 607
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	3 cut(s)	177, 526, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 296
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	4 cut(s)	277, 283, 305, 350
BstX2I	RGATCY	1 cut(s)	526
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	526
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	151
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	299
BtsIMutI	CAGTG	2 cut(s)	192, 339
BveI	ACCTGC	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	3 cut(s)	67, 451, 464
CviQI	GTAC	3 cut(s)	67, 451, 464
DdeI	CTNAG	4 cut(s)	45, 93, 214, 420
DpnI	GATC	3 cut(s)	179, 528, 606
DpnII	GATC	3 cut(s)	177, 526, 604
Eam1104I	CTCTTC	2 cut(s)	334, 490
EarI	CTCTTC	2 cut(s)	334, 490
Eco147I	AGGCCT	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	397
FauNDI	CATATG	1 cut(s)	609
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	4 cut(s)	291, 294, 297, 364
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	4 cut(s)	291, 294, 297, 364
FspBI	CTAG	4 cut(s)	153, 243, 285, 625
GluI	GCNGC	4 cut(s)	291, 294, 297, 364
GsaI	CCCAGC	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	2 cut(s)	138, 565
Hpy166II	GTNNAC	2 cut(s)	105, 189
Hpy188I	TCNGA	3 cut(s)	10, 423, 550
Hpy8I	GTNNAC	2 cut(s)	105, 189
HpyAV	CCTTC	3 cut(s)	65, 260, 517
HpyCH4III	ACNGT	3 cut(s)	196, 343, 472
HpyCH4V	TGCA	5 cut(s)	293, 299, 339, 366, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 296
HpyF3I	CTNAG	4 cut(s)	45, 93, 214, 420
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	3 cut(s)	177, 526, 604
LmnI	GCTCC	3 cut(s)	89, 238, 484
LpnPI	CCDG	9 cut(s)	27, 69, 113, 146, 160, 276, 349, 496, 561
Lsp1109I	GCAGC	4 cut(s)	277, 283, 305, 350
LweI	GCATC	4 cut(s)	14, 256, 308, 466
MaeI	CTAG	4 cut(s)	153, 243, 285, 625
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	179, 528, 606
MbiI	CCGCTC	1 cut(s)	553
MboI	GATC	3 cut(s)	177, 526, 604
MboII	GAAGA	2 cut(s)	321, 507
MflI	RGATCY	1 cut(s)	526
MluCI	AATT	3 cut(s)	29, 38, 386
MmeI	TCCRAC	2 cut(s)	327, 554
MnlI	CCTC	6 cut(s)	88, 265, 340, 343, 493, 573
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	290, 296
NdeI	CATATG	1 cut(s)	609
NdeII	GATC	3 cut(s)	177, 526, 604
NlaIV	GGNNCC	1 cut(s)	528
PceI	AGGCCT	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	138, 565
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	292, 295, 298, 365
PspFI	CCCAGC	1 cut(s)	575
PspN4I	GGNNCC	1 cut(s)	528
PspPI	GGNCC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	3 cut(s)	68, 452, 465
RsaNI	GTAC	3 cut(s)	67, 451, 464
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	4 cut(s)	291, 294, 297, 364
Sau3AI	GATC	3 cut(s)	177, 526, 604
Sau96I	GGNCC	1 cut(s)	97
SfaNI	GCATC	4 cut(s)	14, 256, 308, 466
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	29, 38, 386
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	1 cut(s)	553
SspMI	CTAG	4 cut(s)	153, 243, 285, 625
StuI	AGGCCT	1 cut(s)	151
TaaI	ACNGT	3 cut(s)	196, 343, 472
TaqI	TCGA	3 cut(s)	180, 359, 474
TasI	AATT	3 cut(s)	29, 38, 386
TatI	WGTACW	2 cut(s)	66, 463
TfiI	GAWTC	2 cut(s)	138, 565
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	2 cut(s)	199, 346
TseI	GCWGC	4 cut(s)	290, 293, 296, 363
TspDTI	ATGAA	2 cut(s)	42, 536
TspRI	CASTG	2 cut(s)	199, 346
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	4 cut(s)	153, 243, 285, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.