RchiOBHm_Chr2g0157221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0022664
Physical Location & Seq
Forward (+)
73671869 .. 73672937
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52596

Sequence Viewer

Length: 423 bp
ATGAGTCCTTGCAGGGTCGGAGGTGACGTCTGGTGGTGGTCAGCGGTCGGCTGGCTGGGTTTGATTGTTTTGATTGGCTGGCTGACGACGGTGATTAGACGTTGGTTTCGACTCAGGCAGAGGCGTTTTGGCGTGGATAGAGATCGCGGTCACTCTCCTTGGTCTGGCAGCGATGGGTCGTGTTGCAGGTCTGATGTCACTGATTGGGAGGTGGAGGTGGAGGCGCGGCGAGGCAGGTCTGGGGCTTGGGCATTGGCTGTGGGCCCTTTTGGGCTGAAGCTTGGGTTGGGGTTCTCTTTGGGCCCTGCCTTGTGTTGTTTTTTCAGTTTATTCTTTTGTTATGGGCACCCTAGGTTTGTTTTACTCTCTAATTTTGTTAGGGAATTACGCACTTTCGTGCCTCTTGCAAATCCTCTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.88

Weight (kDa)

9.48

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022664)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0157221 RchiOBHm_Chr5g0016181
rosa_multiflora Rmu_sc0004082.1_g000010 Rmu_sc0024882.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
Acc36I ACCTGC 2 cut(s) 177, 225
AccB1I GGYRCC 1 cut(s) 345
AccII CGCG 2 cut(s) 147, 226
AciI CCGC 3 cut(s) 44, 147, 226
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AleI CACNNNNGTG 1 cut(s) 395
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
AoxI GGCC 2 cut(s) 262, 301
ApaI GGGCCC 2 cut(s) 266, 305
ApeKI GCWGC 1 cut(s) 168
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspA2I CCTAGG 1 cut(s) 350
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 4 cut(s) 262, 263, 301, 302
AsuHPI GGTGA 2 cut(s) 35, 103
AvrII CCTAGG 1 cut(s) 350
BaeGI GKGCMC 3 cut(s) 266, 305, 348
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 2 cut(s) 266, 305
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 167
BfaI CTAG 2 cut(s) 351, 416
BfuAI ACCTGC 2 cut(s) 177, 225
BisI GCNGC 2 cut(s) 169, 227
BlnI CCTAGG 1 cut(s) 350
BlsI GCNGC 2 cut(s) 170, 228
BmgT120I GGNCC 4 cut(s) 262, 263, 301, 302
BmiI GGNNCC 3 cut(s) 264, 303, 347
BsaBI GATNNNNATC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 158, 350
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse8I GATNNNNATC 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 158, 350
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 127
BseSI GKGCMC 3 cut(s) 266, 305, 348
BseXI GCAGC 1 cut(s) 180
BseYI CCCAGC 1 cut(s) 55
Bsh1236I CGCG 2 cut(s) 147, 226
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 264, 303
BshNI GGYRCC 1 cut(s) 345
BsiEI CGRYCG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 164
BsnI GGCC 2 cut(s) 264, 303
Bsp120I GGGCCC 2 cut(s) 262, 301
Bsp1286I GDGCHC 3 cut(s) 266, 305, 348
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 3 cut(s) 44, 147, 226
BspANI GGCC 2 cut(s) 264, 303
BspCNI CTCAG 1 cut(s) 126
BspFNI CGCG 2 cut(s) 147, 226
BspLI GGNNCC 3 cut(s) 264, 303, 347
BspMI ACCTGC 2 cut(s) 177, 225
BspT107I GGYRCC 1 cut(s) 345
BssECI CCNNGG 2 cut(s) 158, 350
BssMI GATC 1 cut(s) 142
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 2 cut(s) 158, 350
Bst4CI ACNGT 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 53, 80
BstDEI CTNAG 1 cut(s) 113
BstFNI CGCG 2 cut(s) 147, 226
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMCI CGRYCG 1 cut(s) 48
BstSLI GKGCMC 3 cut(s) 266, 305, 348
BstUI CGCG 2 cut(s) 147, 226
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 2 cut(s) 264, 303
BtgZI GCGATG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 198
BveI ACCTGC 2 cut(s) 177, 225
Cac8I GCNNGC 2 cut(s) 53, 80
CfoI GCGC 1 cut(s) 226
Cfr13I GGNCC 4 cut(s) 262, 263, 301, 302
DdeI CTNAG 1 cut(s) 113
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 158, 350
Eco24I GRGCYC 2 cut(s) 266, 305
Eco57I CTGAAG 1 cut(s) 296
EcoO109I RGGNCCY 2 cut(s) 263, 302
EcoT14I CCWWGG 2 cut(s) 158, 350
EcoT38I GRGCYC 2 cut(s) 266, 305
ErhI CCWWGG 2 cut(s) 158, 350
FaiI YATR 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 169, 227
FriOI GRGCYC 2 cut(s) 266, 305
Fsp4HI GCNGC 2 cut(s) 169, 227
FspBI CTAG 2 cut(s) 351, 416
GlaI GCGC 1 cut(s) 225
GluI GCNGC 2 cut(s) 169, 227
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 2 cut(s) 264, 303
HhaI GCGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 27
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 2 cut(s) 4, 111
HphI GGTGA 2 cut(s) 35, 103
Hpy188I TCNGA 2 cut(s) 20, 193
Hpy188III TCNNGA 1 cut(s) 416
Hpy99I CGWCG 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 2 cut(s) 27, 100
HpyCH4V TGCA 3 cut(s) 12, 186, 407
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 27, 100
Hsp92I GRCGYC 1 cut(s) 27
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 1 cut(s) 142
Lsp1109I GCAGC 1 cut(s) 180
MaeI CTAG 2 cut(s) 351, 416
MaeII ACGT 2 cut(s) 27, 100
MaeIII GTNAC 3 cut(s) 23, 149, 196
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MhlI GDGCHC 3 cut(s) 266, 305, 348
MluCI AATT 2 cut(s) 370, 383
MlyI GAGTC 2 cut(s) 13, 105
MnlI CCTC 8 cut(s) 14, 114, 202, 208, 214, 224, 411, 423
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 44
MvnI CGCG 2 cut(s) 147, 226
NdeII GATC 1 cut(s) 142
NlaIV GGNNCC 3 cut(s) 264, 303, 347
NmuCI GTSAC 3 cut(s) 23, 149, 196
OliI CACNNNNGTG 1 cut(s) 395
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 106
PkrI GCNGC 2 cut(s) 170, 228
PleI GAGTC 2 cut(s) 12, 105
PpsI GAGTC 2 cut(s) 12, 105
PspFI CCCAGC 1 cut(s) 55
PspN4I GGNNCC 3 cut(s) 264, 303, 347
PspOMI GGGCCC 2 cut(s) 262, 301
PspPI GGNCC 4 cut(s) 262, 263, 301, 302
RseI CAYNNNNRTG 1 cut(s) 395
SatI GCNGC 2 cut(s) 169, 227
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 4 cut(s) 262, 263, 301, 302
SchI GAGTC 2 cut(s) 13, 105
SduI GDGCHC 3 cut(s) 266, 305, 348
SetI ASST 9 cut(s) 25, 30, 103, 191, 213, 219, 239, 282, 356
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 2 cut(s) 370, 383
SsiI CCGC 3 cut(s) 44, 147, 226
SspMI CTAG 2 cut(s) 351, 416
StyI CCWWGG 2 cut(s) 158, 350
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 2 cut(s) 30, 103
TaqI TCGA 1 cut(s) 109
TasI AATT 2 cut(s) 370, 383
TauI GCSGC 1 cut(s) 229
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 3 cut(s) 23, 149, 196
TseI GCWGC 1 cut(s) 168
Tsp45I GTSAC 3 cut(s) 23, 149, 196
TspRI CASTG 1 cut(s) 205
XbaI TCTAGA 1 cut(s) 415
XmaJI CCTAGG 1 cut(s) 350
XspI CTAG 2 cut(s) 351, 416
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.