Rmu_sc0004082.1_g000010

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004082.1
OG0022664
Physical Location & Seq
Forward (+)
33455 .. 38055
4601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004082.1_g000010.1.cds

Sequence Viewer

Length: 1554 bp
atgggtcgaattcaccatataaatgtggtttgtatggttggcttctgtgctgatggatatattcaagctcttgtttacgagttcttaccaaatggttcattgaagaatttcttatcatcagctgatgataggagcactttccttggttgggataagttgcaagaaattgctttagtaaagctgtgctctaaggatcaaagtgcaatatccatgactacagctagggggactattggttacatagcgcccgaagtgttctctaggaacttcggtcatgtctcttataagtcagatgtctatagttttggaactttgttgcttgaaatggttggagggaggaaaaattttgaaatcatggaggactccacaagacaagtctactttccaaaatggatctataatcttttagaacaagggaatgacctacggattcatattgaggatgaaggagatgctaagtttgctagaaaacttgcaattgtgggtctttggtgcatgcaatggcacccaatagatcgtccttcgatgaaagttggcgacggcaagaagaaggagcagatcctttttcggcgacgtcagatcttggggattgttcgaaggcccatttcgaggcgttgtggctccgattcgcggtggcttttggttgaagctttcgagggtgtggtgttttcgatccagtggaggtttactgatttgcggtggaggctcgacatcacctgttttcaaggtcggaggtcggggtctcggatcttaggagaagcggatgctgttttctcagtcggcagcggaagtcccagtgatggcggaggagcgatagaggcaaccagaatgaagggcggggctggcttcagggaaggttgggctgctctgggcgatgtgacaaagtcgggttttggcaatgggcttgggcctctgccttgcgggcggtggccatgggtagtgccagcatcgccgtgttgtccttgtgttgactgtcggacggatctagcaagcggttttcgagcatcttggcgcgctcatggaggactttcagatccagtagtgtgggttttgggagtctgggctacggtgcgggcttcgtggggctcggggctgagctcgacggcacgtttctcctgggcgtctcatggcgagactggtggtgctggttcatggcgaggcttgtacctgtccagctgcgctcaggcgtcagccaagatctttggcctagccgacgcacgttgggggtggctggatgggggcagaggcgacgtctggtggtggtcagtgatcggccaactgtgtttgaatgttttggttggttggttgacgacggtgatgagacattggtttctactcaggcagaggcggtttgatgtggatcgggattgcgatcactccccgtttggtcgggcggtgatgggtcgtgttgtcgatccgacgccactagttgggaggaggagttggaggcacgacgaggcagtctgcagcttgggcggggagggttcggtacgacccaccttctggtctgaccttctgggtttcggcactggctgtgggcctgttttaggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

517

Amino Acids

57.24

Weight (kDa)

9.06

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022664)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0157221 RchiOBHm_Chr5g0016181
rosa_multiflora Rmu_sc0004082.1_g000010 Rmu_sc0024882.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AasI GACNNNNNNGTC 1 cut(s) 1460
AatII GACGTC 2 cut(s) 577, 1254
AccB1I GGYRCC 1 cut(s) 504
AccB7I CCANNNNNTGG 2 cut(s) 1430, 1503
AccI GTMKAC 1 cut(s) 378
AccII CGCG 2 cut(s) 631, 1014
AclWI GGATC 9 cut(s) 201, 401, 553, 667, 755, 990, 1028, 1368, 1409
AcoI YGGCCR 2 cut(s) 929, 1273
AcsI RAATTY 3 cut(s) 9, 106, 343
AcuI CTGAAG 1 cut(s) 832
AcyI GRCGYC 5 cut(s) 574, 1121, 1187, 1251, 1421
AfaI GTAC 2 cut(s) 1166, 1491
AfiI CCNNNNNNNGG 7 cut(s) 148, 609, 630, 800, 1430, 1503, 1547
AgsI TTSAA 7 cut(s) 65, 103, 323, 350, 647, 725, 1288
AhlI ACTAGT 1 cut(s) 1426
AjnI CCWGG 1 cut(s) 1115
AluBI AGCT 8 cut(s) 68, 122, 181, 221, 650, 1098, 1176, 1470
AluI AGCT 8 cut(s) 68, 122, 181, 221, 650, 1098, 1176, 1470
Alw21I GWGCWC 3 cut(s) 137, 188, 1100
Alw26I GTCTC 5 cut(s) 283, 747, 1127, 1128, 1315
AlwI GGATC 9 cut(s) 201, 401, 553, 667, 755, 990, 1028, 1368, 1409
Ama87I CYCGRG 1 cut(s) 1087
AoxI GGCC 6 cut(s) 599, 908, 929, 1204, 1273, 1538
ApeKI GCWGC 4 cut(s) 783, 863, 1176, 1467
ApoI RAATTY 3 cut(s) 9, 106, 343
Asp700I GAANNNNTTC 1 cut(s) 107
AspLEI GCGC 4 cut(s) 247, 1014, 1016, 1181
AspS9I GGNCC 3 cut(s) 600, 908, 1538
AsuHPI GGTGA 4 cut(s) 5, 706, 1327, 1408
AsuII TTCGAA 1 cut(s) 595
AvaI CYCGRG 1 cut(s) 1087
BalI TGGCCA 1 cut(s) 931
BanI GGYRCC 1 cut(s) 504
BanII GRGCYC 2 cut(s) 1088, 1100
Bbv12I GWGCWC 3 cut(s) 137, 188, 1100
BbvI GCAGC 4 cut(s) 795, 850, 1163, 1479
BccI CCATC 4 cut(s) 47, 794, 1229, 1393
BceAI ACGGC 3 cut(s) 556, 937, 1119
BciT130I CCWGG 1 cut(s) 1117
BcoDI GTCTC 5 cut(s) 283, 747, 1127, 1128, 1315
BcuI ACTAGT 1 cut(s) 1426
BfaI CTAG 6 cut(s) 222, 261, 465, 986, 1208, 1427
BfmI CTRYAG 3 cut(s) 216, 298, 1465
BfoI RGCGCY 1 cut(s) 248
BglI GCCNNNNNGGC 1 cut(s) 922
BglII AGATCT 2 cut(s) 579, 1197
BisI GCNGC 4 cut(s) 784, 864, 1177, 1468
BlpI GCTNAGC 1 cut(s) 1094
BlsI GCNGC 4 cut(s) 785, 865, 1178, 1469
Bme1390I CCNGG 1 cut(s) 1117
BmeT110I CYCGRG 1 cut(s) 1087
BmgT120I GGNCC 3 cut(s) 600, 908, 1538
BmiI GGNNCC 2 cut(s) 506, 622
BmrFI CCNGG 1 cut(s) 1117
BmrI ACTGGG 1 cut(s) 789
BmsI GCATC 4 cut(s) 442, 754, 956, 1013
BmuI ACTGGG 1 cut(s) 789
Bpu10I CCTNAGC 1 cut(s) 1182
Bpu1102I GCTNAGC 1 cut(s) 1094
Bpu14I TTCGAA 1 cut(s) 595
BsaBI GATNNNNATC 2 cut(s) 1359, 1371
BsaHI GRCGYC 5 cut(s) 574, 1121, 1187, 1251, 1421
BsaI GGTCTC 1 cut(s) 747
BsaJI CCNNGG 3 cut(s) 142, 932, 1116
BsaXI ACNNNNNCTCC 2 cut(s) 1426, 1456
Bsc4I CCNNNNNNNGG 7 cut(s) 148, 609, 630, 800, 1430, 1503, 1547
Bse1I ACTGG 5 cut(s) 676, 795, 1037, 1141, 1534
Bse3DI GCAATG 2 cut(s) 506, 904
Bse8I GATNNNNATC 2 cut(s) 1359, 1371
BseBI CCWGG 1 cut(s) 1117
BseDI CCNNGG 3 cut(s) 142, 932, 1116
BseGI GGATG 3 cut(s) 448, 769, 1240
BseJI GATNNNNATC 2 cut(s) 1359, 1371
BseLI CCNNNNNNNGG 7 cut(s) 148, 609, 630, 800, 1430, 1503, 1547
BseMI GCAATG 2 cut(s) 506, 904
BseMII CTCAG 4 cut(s) 789, 1085, 1196, 1351
BseNI ACTGG 5 cut(s) 676, 795, 1037, 1141, 1534
BsePI GCGCGC 1 cut(s) 1012
BseRI GAGGAG 3 cut(s) 822, 1450, 1453
BseXI GCAGC 4 cut(s) 795, 850, 1163, 1479
Bsh1236I CGCG 2 cut(s) 631, 1014
BshFI GGCC 6 cut(s) 601, 910, 931, 1206, 1275, 1540
BshNI GGYRCC 1 cut(s) 504
BsiHKAI GWGCWC 3 cut(s) 137, 188, 1100
BsiHKCI CYCGRG 1 cut(s) 1087
BslFI GGGAC 2 cut(s) 241, 777
BslI CCNNNNNNNGG 7 cut(s) 148, 609, 630, 800, 1430, 1503, 1547
BsmAI GTCTC 5 cut(s) 283, 747, 1127, 1128, 1315
BsmBI CGTCTC 1 cut(s) 1128
BsmFI GGGAC 2 cut(s) 241, 777
BsnI GGCC 6 cut(s) 601, 910, 931, 1206, 1275, 1540
Bso31I GGTCTC 1 cut(s) 747
BsoBI CYCGRG 1 cut(s) 1087
Bsp119I TTCGAA 1 cut(s) 595
Bsp1286I GDGCHC 4 cut(s) 137, 188, 1088, 1100
Bsp1720I GCTNAGC 1 cut(s) 1094
Bsp19I CCATGG 1 cut(s) 932
BspANI GGCC 6 cut(s) 601, 910, 931, 1206, 1275, 1540
BspCNI CTCAG 4 cut(s) 788, 1086, 1195, 1350
BspFNI CGCG 2 cut(s) 631, 1014
BspLI GGNNCC 2 cut(s) 506, 622
BspMAI CTGCAG 1 cut(s) 1469
BspPI GGATC 9 cut(s) 201, 401, 553, 667, 755, 990, 1028, 1368, 1409
BspT104I TTCGAA 1 cut(s) 595
BspT107I GGYRCC 1 cut(s) 504
BspTNI GGTCTC 1 cut(s) 747
BsrDI GCAATG 2 cut(s) 506, 904
BsrI ACTGG 5 cut(s) 676, 795, 1037, 1141, 1534
BssECI CCNNGG 3 cut(s) 142, 932, 1116
BssHII GCGCGC 1 cut(s) 1012
BssNI GRCGYC 5 cut(s) 574, 1121, 1187, 1251, 1421
BssT1I CCWWGG 2 cut(s) 142, 932
Bst2UI CCWGG 1 cut(s) 1117
Bst4CI ACNGT 4 cut(s) 974, 1069, 1281, 1315
BstACI GRCGYC 5 cut(s) 574, 1121, 1187, 1251, 1421
BstBI TTCGAA 1 cut(s) 595
BstC8I GCNNGC 7 cut(s) 497, 844, 923, 945, 991, 1014, 1074
BstDEI CTNAG 7 cut(s) 189, 456, 751, 775, 1094, 1182, 1337
BstDSI CCRYGG 1 cut(s) 932
BstENI CCTNNNNNAGG 1 cut(s) 1545
BstF5I GGATG 3 cut(s) 448, 769, 1240
BstFNI CGCG 2 cut(s) 631, 1014
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 4 cut(s) 247, 1014, 1016, 1181
BstMAI GTCTC 5 cut(s) 283, 747, 1127, 1128, 1315
BstMWI GCNNNNNNNGC 7 cut(s) 461, 703, 818, 843, 922, 949, 1473
BstNI CCWGG 1 cut(s) 1117
BstNSI RCATGY 1 cut(s) 499
BstSCI CCNGG 1 cut(s) 1115
BstSFI CTRYAG 3 cut(s) 216, 298, 1465
BstUI CGCG 2 cut(s) 631, 1014
BstV1I GCAGC 4 cut(s) 795, 850, 1163, 1479
BstX2I RGATCY 7 cut(s) 393, 558, 579, 747, 982, 1033, 1197
BstXI CCANNNNNNTGG 1 cut(s) 1044
BstYI RGATCY 7 cut(s) 393, 558, 579, 747, 982, 1033, 1197
BsuRI GGCC 6 cut(s) 601, 910, 931, 1206, 1275, 1540
BtgI CCRYGG 1 cut(s) 932
BtgZI GCGATG 2 cut(s) 888, 933
BtsCI GGATG 3 cut(s) 448, 769, 1240
BtsIMutI CAGTG 4 cut(s) 683, 802, 1272, 1527
Cac8I GCNNGC 7 cut(s) 497, 844, 923, 945, 991, 1014, 1074
CfoI GCGC 4 cut(s) 247, 1014, 1016, 1181
Cfr13I GGNCC 3 cut(s) 600, 908, 1538
CseI GACGC 4 cut(s) 1110, 1176, 1223, 1429
Csp6I GTAC 2 cut(s) 1165, 1490
CviAII CATG 8 cut(s) 211, 275, 355, 496, 933, 1019, 1127, 1152
CviQI GTAC 2 cut(s) 1165, 1490
DdeI CTNAG 7 cut(s) 189, 456, 751, 775, 1094, 1182, 1337
DrdI GACNNNNNNGTC 1 cut(s) 1460
DseDI GACNNNNNNGTC 1 cut(s) 1460
EaeI YGGCCR 2 cut(s) 929, 1273
EciI GGCGGA 1 cut(s) 819
Ecl136II GAGCTC 1 cut(s) 1098
Eco130I CCWWGG 2 cut(s) 142, 932
Eco24I GRGCYC 2 cut(s) 1088, 1100
Eco31I GGTCTC 1 cut(s) 747
Eco53kI GAGCTC 1 cut(s) 1098
Eco57I CTGAAG 1 cut(s) 832
Eco88I CYCGRG 1 cut(s) 1087
EcoICRI GAGCTC 1 cut(s) 1098
EcoNI CCTNNNNNAGG 1 cut(s) 1545
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 1115
EcoT14I CCWWGG 2 cut(s) 142, 932
EcoT38I GRGCYC 2 cut(s) 1088, 1100
ErhI CCWWGG 2 cut(s) 142, 932
Esp3I CGTCTC 1 cut(s) 1128
FaeI CATG 8 cut(s) 214, 278, 358, 499, 936, 1022, 1130, 1155
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 2 cut(s) 241, 777
FatI CATG 8 cut(s) 210, 274, 354, 495, 932, 1018, 1126, 1151
FauI CCCGC 4 cut(s) 830, 914, 1065, 1469
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 4 cut(s) 784, 864, 1177, 1468
FokI GGATG 3 cut(s) 455, 776, 1247
FriOI GRGCYC 2 cut(s) 1088, 1100
Fsp4HI GCNGC 4 cut(s) 784, 864, 1177, 1468
FspBI CTAG 6 cut(s) 222, 261, 465, 986, 1208, 1427
GlaI GCGC 4 cut(s) 246, 1013, 1015, 1180
GluI GCNGC 4 cut(s) 784, 864, 1177, 1468
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 6 cut(s) 601, 910, 931, 1206, 1275, 1540
HgaI GACGC 4 cut(s) 1110, 1176, 1223, 1429
HhaI GCGC 4 cut(s) 247, 1014, 1016, 1181
Hin1I GRCGYC 5 cut(s) 574, 1121, 1187, 1251, 1421
Hin1II CATG 8 cut(s) 214, 278, 358, 499, 936, 1022, 1130, 1155
Hin6I GCGC 4 cut(s) 245, 1012, 1014, 1179
HinP1I GCGC 4 cut(s) 245, 1012, 1014, 1179
HincII GTYRAC 2 cut(s) 970, 1308
HindII GTYRAC 2 cut(s) 970, 1308
HindIII AAGCTT 1 cut(s) 648
HinfI GANTC 4 cut(s) 362, 430, 626, 1056
HphI GGTGA 4 cut(s) 5, 706, 1327, 1408
Hpy166II GTNNAC 5 cut(s) 76, 379, 687, 970, 1308
Hpy188I TCNGA 9 cut(s) 292, 579, 625, 732, 747, 978, 1033, 1419, 1510
Hpy188III TCNNGA 1 cut(s) 1364
Hpy8I GTNNAC 5 cut(s) 76, 379, 687, 970, 1308
Hpy99I CGWCG 8 cut(s) 542, 576, 1105, 1217, 1253, 1315, 1423, 1457
HpyAV CCTTC 8 cut(s) 440, 531, 544, 591, 826, 848, 1510, 1523
HpyCH4III ACNGT 4 cut(s) 974, 1069, 1281, 1315
HpyCH4IV ACGT 4 cut(s) 574, 1108, 1219, 1251
HpyCH4V TGCA 6 cut(s) 160, 203, 476, 495, 499, 1467
HpyF10VI GCNNNNNNNGC 7 cut(s) 461, 703, 818, 843, 922, 949, 1473
HpyF3I CTNAG 7 cut(s) 189, 456, 751, 775, 1094, 1182, 1337
HpySE526I ACGT 4 cut(s) 574, 1108, 1219, 1251
Hsp92I GRCGYC 5 cut(s) 574, 1121, 1187, 1251, 1421
Hsp92II CATG 8 cut(s) 214, 278, 358, 499, 936, 1022, 1130, 1155
HspAI GCGC 4 cut(s) 245, 1012, 1014, 1179
LmnI GCTCC 4 cut(s) 132, 553, 626, 809
Lsp1109I GCAGC 4 cut(s) 795, 850, 1163, 1479
LweI GCATC 4 cut(s) 442, 754, 956, 1013
MaeI CTAG 6 cut(s) 222, 261, 465, 986, 1208, 1427
MaeII ACGT 4 cut(s) 574, 1108, 1219, 1251
MaeIII GTNAC 2 cut(s) 236, 877
MboII GAAGA 2 cut(s) 115, 559
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 7 cut(s) 393, 558, 579, 747, 982, 1033, 1197
MhlI GDGCHC 4 cut(s) 137, 188, 1088, 1100
MlsI TGGCCA 1 cut(s) 931
MluCI AATT 5 cut(s) 9, 106, 165, 343, 477
MluNI TGGCCA 1 cut(s) 931
MlyI GAGTC 2 cut(s) 356, 1065
MmeI TCCRAC 5 cut(s) 310, 710, 956, 1424, 1442
Mox20I TGGCCA 1 cut(s) 931
MroXI GAANNNNTTC 1 cut(s) 107
MscI TGGCCA 1 cut(s) 931
MslI CAYNNNNRTG 2 cut(s) 21, 952
Msp20I TGGCCA 1 cut(s) 931
MspA1I CMGCKG 3 cut(s) 122, 786, 1176
MspR9I CCNGG 1 cut(s) 1117
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 1117
MvnI CGCG 2 cut(s) 631, 1014
MwoI GCNNNNNNNGC 7 cut(s) 461, 703, 818, 843, 922, 949, 1473
NcoI CCATGG 1 cut(s) 932
NlaIII CATG 8 cut(s) 214, 278, 358, 499, 936, 1022, 1130, 1155
NlaIV GGNNCC 2 cut(s) 506, 622
NmuCI GTSAC 1 cut(s) 877
NspI RCATGY 1 cut(s) 499
NspV TTCGAA 1 cut(s) 595
PaeI GCATGC 1 cut(s) 499
PauI GCGCGC 1 cut(s) 1012
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 430, 626
PflFI GACNNNGTC 1 cut(s) 883
PflMI CCANNNNNTGG 2 cut(s) 1430, 1503
PkrI GCNGC 4 cut(s) 785, 865, 1178, 1469
PleI GAGTC 2 cut(s) 356, 1064
PpsI GAGTC 2 cut(s) 356, 1064
PsiI TTATAA 1 cut(s) 285
Psp124BI GAGCTC 1 cut(s) 1100
Psp6I CCWGG 1 cut(s) 1115
PspGI CCWGG 1 cut(s) 1115
PspN4I GGNNCC 2 cut(s) 506, 622
PspPI GGNCC 3 cut(s) 600, 908, 1538
PstI CTGCAG 1 cut(s) 1469
PsuI RGATCY 7 cut(s) 393, 558, 579, 747, 982, 1033, 1197
PsyI GACNNNGTC 1 cut(s) 883
PteI GCGCGC 1 cut(s) 1012
PvuII CAGCTG 2 cut(s) 122, 1176
RsaI GTAC 2 cut(s) 1166, 1491
RsaNI GTAC 2 cut(s) 1165, 1490
RseI CAYNNNNRTG 2 cut(s) 21, 952
SacI GAGCTC 1 cut(s) 1100
SatI GCNGC 4 cut(s) 784, 864, 1177, 1468
Sau96I GGNCC 3 cut(s) 600, 908, 1538
SchI GAGTC 2 cut(s) 356, 1065
ScrFI CCNGG 1 cut(s) 1117
SduI GDGCHC 4 cut(s) 137, 188, 1088, 1100
SfaNI GCATC 4 cut(s) 442, 754, 956, 1013
SfcI CTRYAG 3 cut(s) 216, 298, 1465
SfuI TTCGAA 1 cut(s) 595
SmiMI CAYNNNNRTG 2 cut(s) 21, 952
SpeI ACTAGT 1 cut(s) 1426
SphI GCATGC 1 cut(s) 499
Sse9I AATT 5 cut(s) 9, 106, 165, 343, 477
SspMI CTAG 6 cut(s) 222, 261, 465, 986, 1208, 1427
SstI GAGCTC 1 cut(s) 1100
StyD4I CCNGG 1 cut(s) 1115
StyI CCWWGG 2 cut(s) 142, 932
TaaI ACNGT 4 cut(s) 974, 1069, 1281, 1315
TaiI ACGT 4 cut(s) 577, 1111, 1222, 1254
TaqII GACCGA 1 cut(s) 260
TasI AATT 5 cut(s) 9, 106, 165, 343, 477
TfiI GAWTC 2 cut(s) 430, 626
TscAI CASTG 4 cut(s) 683, 802, 1272, 1534
TseFI GTSAC 1 cut(s) 877
TseI GCWGC 4 cut(s) 783, 863, 1176, 1467
Tsp45I GTSAC 1 cut(s) 877
TspDTI ATGAA 6 cut(s) 87, 422, 459, 542, 845, 1140
TspGWI ACGGA 2 cut(s) 442, 995
TspRI CASTG 4 cut(s) 683, 802, 1272, 1534
Tth111I GACNNNGTC 1 cut(s) 883
Van91I CCANNNNNTGG 2 cut(s) 1430, 1503
XagI CCTNNNNNAGG 1 cut(s) 1545
XapI RAATTY 3 cut(s) 9, 106, 343
XceI RCATGY 1 cut(s) 499
XmiI GTMKAC 1 cut(s) 378
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 6 cut(s) 222, 261, 465, 986, 1208, 1427
ZraI GACGTC 2 cut(s) 575, 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.