RchiOBHm_Chr5g0016181

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0022664
Physical Location & Seq
Forward (+)
11195043 .. 11195873
831 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29658

Sequence Viewer

Length: 393 bp
ATGCGACCTCGCCGGGGCGGAGGGATGTCTGGTGGTGGTCGGCCGTCGGCAGGCTGGGTTGTGGTTTTACGATTGTTGGTTGGTTGGCTGTCGACGGTTATCAGATGTTGGTTCGGATCTTCAGGCAAAGGCAGTTTGGTGTGGGATCAGGTTCGCGGTCACTTATCGTTGATCGGGCGGCGATGGTGTCGTGTTGCTTGGTTCGATGCCACTGGTTGGGAGGCGGAGGTAGAGGCGCGGCAAGGTGATCTACGACTTGGGCCGGGAGGGCTGGGTACGACCCACCTTGTAGTTTTGACCTCCTGGCCTTGGGCACTGGTTGTGGGCCTTTTTCGGCTGAAGTTTGGGTTGGGGTTTCTCTTTGGGCCCTGCCTTGTGTTTTCTTGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.26

Weight (kDa)

11.29

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022664)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0157221 RchiOBHm_Chr5g0016181
rosa_multiflora Rmu_sc0004082.1_g000010 Rmu_sc0024882.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 216
AccI GTMKAC 1 cut(s) 92
AccII CGCG 2 cut(s) 156, 238
AciI CCGC 5 cut(s) 18, 156, 178, 224, 238
AclWI GGATC 2 cut(s) 124, 153
AcoI YGGCCR 1 cut(s) 41
AcuI CTGAAG 2 cut(s) 105, 359
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 4 cut(s) 14, 50, 216, 309
AjnI CCWGG 1 cut(s) 302
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AlwI GGATC 2 cut(s) 124, 153
AoxI GGCC 5 cut(s) 41, 260, 305, 325, 365
ApaI GGGCCC 1 cut(s) 369
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 4 cut(s) 260, 325, 365, 366
AsuC2I CCSGG 2 cut(s) 14, 264
AsuHPI GGTGA 1 cut(s) 257
BaeGI GKGCMC 2 cut(s) 316, 369
BanII GRGCYC 1 cut(s) 369
BccI CCATC 1 cut(s) 177
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 304
BcnI CCSGG 2 cut(s) 14, 264
BfaI CTAG 1 cut(s) 391
BglI GCCNNNNNGGC 1 cut(s) 268
BisI GCNGC 2 cut(s) 179, 239
BlsI GCNGC 2 cut(s) 180, 240
Bme1390I CCNGG 3 cut(s) 14, 264, 304
BmgT120I GGNCC 4 cut(s) 260, 325, 365, 366
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 3 cut(s) 14, 264, 304
BmsI GCATC 1 cut(s) 196
BpuMI CCSGG 2 cut(s) 14, 264
BsaJI CCNNGG 2 cut(s) 13, 308
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 50, 216, 309
Bse1I ACTGG 2 cut(s) 217, 321
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 13, 308
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 4 cut(s) 14, 50, 216, 309
BseNI ACTGG 2 cut(s) 217, 321
BseSI GKGCMC 2 cut(s) 316, 369
BseX3I CGGCCG 1 cut(s) 41
BseYI CCCAGC 2 cut(s) 54, 271
Bsh1236I CGCG 2 cut(s) 156, 238
Bsh1285I CGRYCG 1 cut(s) 44
BshFI GGCC 5 cut(s) 43, 262, 307, 327, 367
BsiEI CGRYCG 1 cut(s) 44
BsiSI CCGG 2 cut(s) 13, 263
BslI CCNNNNNNNGG 4 cut(s) 14, 50, 216, 309
BsnI GGCC 5 cut(s) 43, 262, 307, 327, 367
Bsp120I GGGCCC 1 cut(s) 365
Bsp1286I GDGCHC 2 cut(s) 316, 369
Bsp143I GATC 4 cut(s) 116, 145, 171, 247
BspACI CCGC 5 cut(s) 18, 156, 178, 224, 238
BspANI GGCC 5 cut(s) 43, 262, 307, 327, 367
BspFNI CGCG 2 cut(s) 156, 238
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 2 cut(s) 124, 153
BsrI ACTGG 2 cut(s) 217, 321
BssECI CCNNGG 2 cut(s) 13, 308
BssMI GATC 4 cut(s) 116, 145, 171, 247
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 52
BstF5I GGATG 1 cut(s) 30
BstFNI CGCG 2 cut(s) 156, 238
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 4 cut(s) 119, 148, 174, 250
BstMBI GATC 4 cut(s) 116, 145, 171, 247
BstMCI CGRYCG 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 3 cut(s) 12, 262, 302
BstSLI GKGCMC 2 cut(s) 316, 369
BstUI CGCG 2 cut(s) 156, 238
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BstZI CGGCCG 1 cut(s) 41
BsuRI GGCC 5 cut(s) 43, 262, 307, 327, 367
BtgZI GCGATG 1 cut(s) 196
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 210, 314
Cac8I GCNNGC 1 cut(s) 52
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 4 cut(s) 260, 325, 365, 366
Csp6I GTAC 1 cut(s) 276
CviJI RGCY 9 cut(s) 43, 54, 88, 262, 271, 307, 327, 337, 367
CviKI_1 RGCY 9 cut(s) 43, 54, 88, 262, 271, 307, 327, 337, 367
CviQI GTAC 1 cut(s) 276
DpnI GATC 4 cut(s) 118, 147, 173, 249
DpnII GATC 4 cut(s) 116, 145, 171, 247
EaeI YGGCCR 1 cut(s) 41
EagI CGGCCG 1 cut(s) 41
EciI GGCGGA 2 cut(s) 33, 239
EclXI CGGCCG 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 369
Eco52I CGGCCG 1 cut(s) 41
Eco57I CTGAAG 2 cut(s) 105, 359
EcoO109I RGGNCCY 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 308
FblI GTMKAC 1 cut(s) 92
Fnu4HI GCNGC 2 cut(s) 179, 239
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 179, 239
FspBI CTAG 1 cut(s) 391
GlaI GCGC 1 cut(s) 237
GluI GCNGC 2 cut(s) 179, 239
GsaI CCCAGC 2 cut(s) 58, 275
HaeIII GGCC 5 cut(s) 43, 262, 307, 327, 367
HapII CCGG 2 cut(s) 13, 263
HhaI GCGC 1 cut(s) 238
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HpaII CCGG 2 cut(s) 13, 263
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 104, 116
Hpy8I GTNNAC 1 cut(s) 93
Hpy99I CGWCG 2 cut(s) 49, 97
HpyCH4III ACNGT 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HspAI GCGC 1 cut(s) 236
Kzo9I GATC 4 cut(s) 116, 145, 171, 247
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 158
MalI GATC 4 cut(s) 118, 147, 173, 249
MboI GATC 4 cut(s) 116, 145, 171, 247
MboII GAAGA 1 cut(s) 111
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 316, 369
MnlI CCTC 7 cut(s) 14, 18, 214, 220, 226, 260, 310
MspI CCGG 2 cut(s) 13, 263
MspR9I CCNGG 3 cut(s) 14, 264, 304
MvaI CCWGG 1 cut(s) 304
MvnI CGCG 2 cut(s) 156, 238
MwoI GCNNNNNNNGC 1 cut(s) 268
NciI CCSGG 2 cut(s) 14, 264
NdeII GATC 4 cut(s) 116, 145, 171, 247
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 158
PflMI CCANNNNNTGG 1 cut(s) 216
PkrI GCNGC 2 cut(s) 180, 240
Psp6I CCWGG 1 cut(s) 302
PspFI CCCAGC 2 cut(s) 54, 271
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 367
PspOMI GGGCCC 1 cut(s) 365
PspPI GGNCC 4 cut(s) 260, 325, 365, 366
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SalI GTCGAC 1 cut(s) 91
SatI GCNGC 2 cut(s) 179, 239
Sau3AI GATC 4 cut(s) 116, 145, 171, 247
Sau96I GGNCC 4 cut(s) 260, 325, 365, 366
ScrFI CCNGG 3 cut(s) 14, 264, 304
SduI GDGCHC 2 cut(s) 316, 369
SetI ASST 6 cut(s) 10, 153, 231, 247, 288, 302
SfaNI GCATC 1 cut(s) 196
SsiI CCGC 5 cut(s) 18, 156, 178, 224, 238
SspMI CTAG 1 cut(s) 391
StyD4I CCNGG 3 cut(s) 12, 262, 302
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 92, 204
TauI GCSGC 2 cut(s) 181, 241
TscAI CASTG 2 cut(s) 217, 321
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspRI CASTG 2 cut(s) 217, 321
Van91I CCANNNNNTGG 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 92
XspI CTAG 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.