Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024882.1

Orthogroup ID

OG0022664

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2870

Gene Structure 2870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024882.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 866 bp

aggaagacaagaaggggaatgcaacatatataattagtgtcgctcgaaagcttggttgctccattttcttgttacctgaggacattatggaggtaaaccagaagatgatccttattttgactgcaagcatcatgtactggagtatgcagcaagcaggagcagaatcagagtcggccgctgacagtcccgtgggtacccctactaaagcttctaaatctggtgagagcgaagcaggtttggctagggaagtctcgaacttgtccatcactggcaatactacttcccaacagacaggaaatcaatcttctcaagaatcaaaagacctcccaaatagtgcctgtccggctgcgctccggcgtctgcaatggtctttggccttgcctgcgcacgttggggttggccggacaggtagcttagttcggaggggtgcttccgactcggaggttgagatcgatgggggcggaggtgacgtctggtggtggtcagcggtcggctggctgggtttgattgttttgattggttggctgacgacggtgattagacgttggtttcgactcaggcagagacgttttggcgtggatcgagatcgcggtcactctccttggtctggcagcgatgggtcgtgttgcaggtctgatgtcactgattgggaggtggaggtggaggcgcggcgaggcaggtctgcagcttgggcattggctgtgggcccttttgggctgaagcttgggttggggttctctttgggccctgccttgtgttgtttttccagtttattcttttgttatgggcaccctaggtttgttttactctctaattttgttagggaattacgcactttcgtgcctctagcaaatcctctagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0022414 GO:0022607 GO:0030029 GO:0030036 GO:0030154 GO:0030312 GO:0032432 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051015 GO:0051017 GO:0051639 GO:0051704 GO:0051764 GO:0060560 GO:0061572 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

287

Amino Acids

31.23

Weight (kDa)

8.25

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022664)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0157221 RchiOBHm_Chr5g0016181
rosa_multiflora	Rmu_sc0004082.1_g000010 Rmu_sc0024882.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	473
Acc16I	TGCGCA	1 cut(s)	386
Acc36I	ACCTGC	3 cut(s)	223, 620, 668
Acc65I	GGTACC	1 cut(s)	193
AccB1I	GGYRCC	2 cut(s)	193, 788
AccII	CGCG	2 cut(s)	590, 669
AciI	CCGC	5 cut(s)	176, 461, 487, 590, 669
AclWI	GGATC	2 cut(s)	102, 587
AcoI	YGGCCR	2 cut(s)	173, 399
AcuI	CTGAAG	1 cut(s)	739
AcyI	GRCGYC	2 cut(s)	357, 470
AfaI	GTAC	2 cut(s)	136, 195
AfiI	CCNNNNNNNGG	1 cut(s)	607
AjuI	GAANNNNNNNTTGG	2 cut(s)	712, 744
AleI	CACNNNNGTG	1 cut(s)	838
AluBI	AGCT	5 cut(s)	51, 208, 413, 688, 723
AluI	AGCT	5 cut(s)	51, 208, 413, 688, 723
Alw26I	GTCTC	2 cut(s)	255, 558
AlwI	GGATC	2 cut(s)	102, 587
AoxI	GGCC	5 cut(s)	173, 374, 399, 705, 744
ApaI	GGGCCC	2 cut(s)	709, 748
ApeKI	GCWGC	4 cut(s)	147, 346, 611, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
Asp718I	GGTACC	1 cut(s)	193
AspA2I	CCTAGG	1 cut(s)	793
AspLEI	GCGC	3 cut(s)	351, 387, 669
AspS9I	GGNCC	4 cut(s)	705, 706, 744, 745
AsuHPI	GGTGA	3 cut(s)	232, 478, 546
AvrII	CCTAGG	1 cut(s)	793
AxyI	CCTNAGG	1 cut(s)	77
BaeGI	GKGCMC	3 cut(s)	709, 748, 791
BanI	GGYRCC	2 cut(s)	193, 788
BanII	GRGCYC	2 cut(s)	709, 748
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	4 cut(s)	159, 333, 623, 697
BccI	CCATC	3 cut(s)	271, 448, 610
BcoDI	GTCTC	2 cut(s)	255, 558
BfaI	CTAG	4 cut(s)	242, 794, 847, 859
BfmI	CTRYAG	1 cut(s)	683
BfuAI	ACCTGC	3 cut(s)	223, 620, 668
BglI	GCCNNNNNGGC	1 cut(s)	343
BisI	GCNGC	6 cut(s)	148, 176, 347, 612, 670, 686
BlnI	CCTAGG	1 cut(s)	793
BlsI	GCNGC	6 cut(s)	149, 177, 348, 613, 671, 687
BmgT120I	GGNCC	4 cut(s)	705, 706, 744, 745
BmiI	GGNNCC	4 cut(s)	195, 707, 746, 790
BmsI	GCATC	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	293
Bsa29I	ATCGAT	1 cut(s)	452
BsaBI	GATNNNNATC	1 cut(s)	584
BsaHI	GRCGYC	2 cut(s)	357, 470
BsaJI	CCNNGG	3 cut(s)	188, 601, 793
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	3 cut(s)	142, 273, 767
Bse21I	CCTNAGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	584
BseCI	ATCGAT	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	188, 601, 793
BseJI	GATNNNNATC	1 cut(s)	584
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	2 cut(s)	68, 570
BseNI	ACTGG	3 cut(s)	142, 273, 767
BseSI	GKGCMC	3 cut(s)	709, 748, 791
BseX3I	CGGCCG	1 cut(s)	173
BseXI	GCAGC	4 cut(s)	159, 333, 623, 697
BseYI	CCCAGC	1 cut(s)	498
Bsh1236I	CGCG	2 cut(s)	590, 669
Bsh1285I	CGRYCG	2 cut(s)	176, 491
BshFI	GGCC	5 cut(s)	175, 376, 401, 707, 746
BshNI	GGYRCC	2 cut(s)	193, 788
BshVI	ATCGAT	1 cut(s)	452
BsiEI	CGRYCG	2 cut(s)	176, 491
BsiSI	CCGG	3 cut(s)	343, 354, 402
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmAI	GTCTC	2 cut(s)	255, 558
BsmBI	CGTCTC	1 cut(s)	558
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	5 cut(s)	175, 376, 401, 707, 746
Bsp120I	GGGCCC	2 cut(s)	705, 744
Bsp1286I	GDGCHC	3 cut(s)	709, 748, 791
Bsp143I	GATC	4 cut(s)	107, 449, 579, 585
BspACI	CCGC	5 cut(s)	176, 461, 487, 590, 669
BspANI	GGCC	5 cut(s)	175, 376, 401, 707, 746
BspCNI	CTCAG	2 cut(s)	69, 569
BspDI	ATCGAT	1 cut(s)	452
BspFNI	CGCG	2 cut(s)	590, 669
BspLI	GGNNCC	4 cut(s)	195, 707, 746, 790
BspMAI	CTGCAG	1 cut(s)	687
BspMI	ACCTGC	3 cut(s)	223, 620, 668
BspPI	GGATC	2 cut(s)	102, 587
BspT107I	GGYRCC	2 cut(s)	193, 788
BsrDI	GCAATG	1 cut(s)	370
BsrI	ACTGG	3 cut(s)	142, 273, 767
BssECI	CCNNGG	3 cut(s)	188, 601, 793
BssMI	GATC	4 cut(s)	107, 449, 579, 585
BssNI	GRCGYC	2 cut(s)	357, 470
BssT1I	CCWWGG	2 cut(s)	601, 793
Bst4CI	ACNGT	2 cut(s)	184, 534
BstACI	GRCGYC	2 cut(s)	357, 470
BstC8I	GCNNGC	4 cut(s)	126, 152, 383, 496
BstDEI	CTNAG	3 cut(s)	77, 414, 556
BstDSI	CCRYGG	1 cut(s)	188
BstFNI	CGCG	2 cut(s)	590, 669
BstHHI	GCGC	3 cut(s)	351, 387, 669
BstKTI	GATC	4 cut(s)	110, 452, 582, 588
BstMAI	GTCTC	2 cut(s)	255, 558
BstMBI	GATC	4 cut(s)	107, 449, 579, 585
BstMCI	CGRYCG	2 cut(s)	176, 491
BstMWI	GCNNNNNNNGC	4 cut(s)	238, 343, 382, 691
BstSFI	CTRYAG	1 cut(s)	683
BstSLI	GKGCMC	3 cut(s)	709, 748, 791
BstUI	CGCG	2 cut(s)	590, 669
BstV1I	GCAGC	4 cut(s)	159, 333, 623, 697
BstV2I	GAAGAC	1 cut(s)	11
BstZI	CGGCCG	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	452
Bsu36I	CCTNAGG	1 cut(s)	77
BsuRI	GGCC	5 cut(s)	175, 376, 401, 707, 746
BsuTUI	ATCGAT	1 cut(s)	452
BtgI	CCRYGG	1 cut(s)	188
BtgZI	GCGATG	1 cut(s)	629
BtsIMutI	CAGTG	2 cut(s)	266, 641
BveI	ACCTGC	3 cut(s)	223, 620, 668
Cac8I	GCNNGC	4 cut(s)	126, 152, 383, 496
CfoI	GCGC	3 cut(s)	351, 387, 669
Cfr13I	GGNCC	4 cut(s)	705, 706, 744, 745
ClaI	ATCGAT	1 cut(s)	452
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	2 cut(s)	135, 194
CviAII	CATG	1 cut(s)	132
CviQI	GTAC	2 cut(s)	135, 194
DdeI	CTNAG	3 cut(s)	77, 414, 556
DpnI	GATC	4 cut(s)	109, 451, 581, 587
DpnII	GATC	4 cut(s)	107, 449, 579, 585
EaeI	YGGCCR	2 cut(s)	173, 399
EagI	CGGCCG	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	476
EclXI	CGGCCG	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	601, 793
Eco24I	GRGCYC	2 cut(s)	709, 748
Eco52I	CGGCCG	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	739
Eco81I	CCTNAGG	1 cut(s)	77
EcoO109I	RGGNCCY	2 cut(s)	706, 745
EcoT14I	CCWWGG	2 cut(s)	601, 793
EcoT38I	GRGCYC	2 cut(s)	709, 748
ErhI	CCWWGG	2 cut(s)	601, 793
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	1 cut(s)	135
FaiI	YATR	7 cut(s)	27, 29, 31, 88, 133, 145, 785
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	131
Fnu4HI	GCNGC	6 cut(s)	148, 176, 347, 612, 670, 686
FriOI	GRGCYC	2 cut(s)	709, 748
Fsp4HI	GCNGC	6 cut(s)	148, 176, 347, 612, 670, 686
FspBI	CTAG	4 cut(s)	242, 794, 847, 859
FspI	TGCGCA	1 cut(s)	386
GlaI	GCGC	3 cut(s)	350, 386, 668
GluI	GCNGC	6 cut(s)	148, 176, 347, 612, 670, 686
GsaI	CCCAGC	1 cut(s)	502
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	5 cut(s)	175, 376, 401, 707, 746
HapII	CCGG	3 cut(s)	343, 354, 402
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	3 cut(s)	351, 387, 669
Hin1I	GRCGYC	2 cut(s)	357, 470
Hin1II	CATG	1 cut(s)	135
Hin6I	GCGC	3 cut(s)	349, 385, 667
HinP1I	GCGC	3 cut(s)	349, 385, 667
HindIII	AAGCTT	3 cut(s)	49, 206, 721
HinfI	GANTC	5 cut(s)	163, 169, 313, 436, 554
HpaII	CCGG	3 cut(s)	343, 354, 402
HphI	GGTGA	3 cut(s)	232, 478, 546
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	5 cut(s)	168, 422, 435, 441, 636
Hpy188III	TCNNGA	4 cut(s)	252, 310, 583, 859
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	1 cut(s)	534
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	2 cut(s)	184, 534
HpyCH4IV	ACGT	4 cut(s)	389, 470, 543, 567
HpyCH4V	TGCA	6 cut(s)	22, 124, 147, 363, 629, 685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	238, 343, 382, 691
HpyF3I	CTNAG	3 cut(s)	77, 414, 556
HpySE526I	ACGT	4 cut(s)	389, 470, 543, 567
Hsp92I	GRCGYC	2 cut(s)	357, 470
Hsp92II	CATG	1 cut(s)	135
HspAI	GCGC	3 cut(s)	349, 385, 667
KpnI	GGTACC	1 cut(s)	197
Kzo9I	GATC	4 cut(s)	107, 449, 579, 585
LmnI	GCTCC	3 cut(s)	64, 157, 356
Lsp1109I	GCAGC	4 cut(s)	159, 333, 623, 697
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	4 cut(s)	242, 794, 847, 859
MaeII	ACGT	4 cut(s)	389, 470, 543, 567
MaeIII	GTNAC	4 cut(s)	71, 466, 592, 639
MalI	GATC	4 cut(s)	109, 451, 581, 587
MboI	GATC	4 cut(s)	107, 449, 579, 585
MboII	GAAGA	3 cut(s)	16, 114, 296
MhlI	GDGCHC	3 cut(s)	709, 748, 791
MluCI	AATT	3 cut(s)	32, 813, 826
MlyI	GAGTC	3 cut(s)	178, 430, 548
MmeI	TCCRAC	1 cut(s)	458
MslI	CAYNNNNRTG	1 cut(s)	838
MspA1I	CMGCKG	2 cut(s)	178, 487
MspI	CCGG	3 cut(s)	343, 354, 402
Mva1269I	GAATGC	1 cut(s)	24
MvnI	CGCG	2 cut(s)	590, 669
MwoI	GCNNNNNNNGC	4 cut(s)	238, 343, 382, 691
NdeII	GATC	4 cut(s)	107, 449, 579, 585
NlaIII	CATG	1 cut(s)	135
NlaIV	GGNNCC	4 cut(s)	195, 707, 746, 790
NmuCI	GTSAC	3 cut(s)	466, 592, 639
NsbI	TGCGCA	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	838
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PctI	GAATGC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	163, 313
PkrI	GCNGC	6 cut(s)	149, 177, 348, 613, 671, 687
PleI	GAGTC	3 cut(s)	177, 430, 548
PpsI	GAGTC	3 cut(s)	177, 430, 548
PspFI	CCCAGC	1 cut(s)	498
PspN4I	GGNNCC	4 cut(s)	195, 707, 746, 790
PspOMI	GGGCCC	2 cut(s)	705, 744
PspPI	GGNCC	4 cut(s)	705, 706, 744, 745
PstI	CTGCAG	1 cut(s)	687
RsaI	GTAC	2 cut(s)	136, 195
RsaNI	GTAC	2 cut(s)	135, 194
RseI	CAYNNNNRTG	1 cut(s)	838
SatI	GCNGC	6 cut(s)	148, 176, 347, 612, 670, 686
Sau3AI	GATC	4 cut(s)	107, 449, 579, 585
Sau96I	GGNCC	4 cut(s)	705, 706, 744, 745
SchI	GAGTC	3 cut(s)	178, 430, 548
SduI	GDGCHC	3 cut(s)	709, 748, 791
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	838
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	3 cut(s)	32, 813, 826
SsiI	CCGC	5 cut(s)	176, 461, 487, 590, 669
SspMI	CTAG	4 cut(s)	242, 794, 847, 859
StyI	CCWWGG	2 cut(s)	601, 793
TaaI	ACNGT	2 cut(s)	184, 534
TaiI	ACGT	4 cut(s)	392, 473, 546, 570
TaqI	TCGA	5 cut(s)	45, 253, 452, 552, 582
TasI	AATT	3 cut(s)	32, 813, 826
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	2 cut(s)	178, 672
TfiI	GAWTC	2 cut(s)	163, 313
TscAI	CASTG	2 cut(s)	273, 648
TseFI	GTSAC	3 cut(s)	466, 592, 639
TseI	GCWGC	4 cut(s)	147, 346, 611, 685
Tsp45I	GTSAC	3 cut(s)	466, 592, 639
TspRI	CASTG	2 cut(s)	273, 648
XbaI	TCTAGA	1 cut(s)	858
XmaJI	CCTAGG	1 cut(s)	793
XspI	CTAG	4 cut(s)	242, 794, 847, 859
ZraI	GACGTC	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.