Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022643

Physical Location & Seq

Genomic Coordinates Forward (+)

81777637 .. 81778092

Gene Structure 456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGTATAAGAAAGATGCCTGGAATGAGCTCGCTTTATGTTGGTGGCCAAATTCATCAGTACAGTGCTGGAGACAAGTCACACCCACAGACAATGGAGATTTACATGAAGTTGGATGAGATGATACAAAAGTTGAGAATGGCCGGTTATGTCCCAAATGCTGCTACTCAAGTTTTCTCTGGTTTTGACAGCACAGACAAGAGTAATGCGGGTAAATTAGAGGAGATAGAACAGGCATTGTTCTCCCACGTTGAAAAGTTGGCAGTTTGTTATGGACTTATAAGCACAAGAGCAGGTTCTCCGCTTCATATATTCAAAAATCTACGCATCTGTCAAGACTGCCATTCTGCGATGAAACTAGTTTCTCATGTCTATAATCGAGAAATTGTCATTAGGGATCGCAACCGATTTCATTGTTTCAAGCAAGGTTCTTGTTCGTGCTCTGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

151

Amino Acids

17.12

Weight (kDa)

8.74

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Eplus_motif	PF20430	18 - 45	7.9e-08	E+ motif
DYW_deaminase	PF14432	74 - 151	1.3e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0022643)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0167151
rosa_multiflora	Rmu_co7972092.1_g000001
rosa_samantha	Rh2BG606900 Rh7AG041900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	284
AciI	CCGC	2 cut(s)	209, 302
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	2 cut(s)	46, 141
AcsI	RAATTY	1 cut(s)	51
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	254, 316, 421
AhlI	ACTAGT	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
Alw21I	GWGCWC	2 cut(s)	32, 443
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	2 cut(s)	46, 141
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	51
BaeI	ACNNNNGTAYC	2 cut(s)	116, 149
BalI	TGGCCA	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	32, 443
BbvI	GCAGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	66
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	2 cut(s)	6, 336
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	2 cut(s)	48, 143
BsiHKAI	GWGCWC	2 cut(s)	32, 443
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	48, 143
Bsp1286I	GDGCHC	2 cut(s)	32, 443
Bsp143I	GATC	1 cut(s)	397
BspACI	CCGC	2 cut(s)	209, 302
BspANI	GGCC	2 cut(s)	48, 143
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssMI	GATC	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	1 cut(s)	400
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	397
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	48, 143
BtgZI	GCGATG	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	70
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	2 cut(s)	106, 368
CviJI	RGCY	3 cut(s)	30, 48, 143
CviKI_1	RGCY	3 cut(s)	30, 48, 143
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
EaeI	YGGCCR	2 cut(s)	46, 141
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	2 cut(s)	109, 371
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	105, 367
FauI	CCCGC	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	48, 143
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	2 cut(s)	109, 371
HpaII	CCGG	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	2 cut(s)	335, 380
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	109, 371
Kzo9I	GATC	1 cut(s)	397
LpnPI	CCDG	7 cut(s)	6, 33, 54, 157, 165, 218, 279
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	2 cut(s)	6, 336
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MhlI	GDGCHC	2 cut(s)	32, 443
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	3 cut(s)	51, 215, 384
MluNI	TGGCCA	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	1 cut(s)	214
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	48
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	21
MvaI	CCWGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	2 cut(s)	109, 371
NmuCI	GTSAC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	163
PsiI	TTATAA	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	32
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	2 cut(s)	32, 443
SetI	ASST	4 cut(s)	32, 252, 298, 430
SfaNI	GCATC	2 cut(s)	6, 336
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
SpeI	ACTAGT	1 cut(s)	358
Sse9I	AATT	3 cut(s)	51, 215, 384
SsiI	CCGC	2 cut(s)	209, 302
SspMI	CTAG	1 cut(s)	359
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	379
TasI	AATT	3 cut(s)	51, 215, 384
TatI	WGTACW	1 cut(s)	60
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	78
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	5 cut(s)	44, 122, 296, 368, 401
TspRI	CASTG	1 cut(s)	70
XapI	RAATTY	1 cut(s)	51
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.