Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0022643

Physical Location & Seq

Genomic Coordinates Forward (+)

82825077 .. 82851795

Gene Structure 26719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG606900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCCTGGAATGAGCTCGCTTTATGTTGGTGGCCAAATTCATCAGTACAGTGCTGGAGACAAGTCACACCCACAGACAATGGAGATTTACATGAAGTTGGATGAGATGATACAAAAGTTGAGAATGGCCGGTTATGTCCCAAATGCTGCTACTCAAGTTTTCTCTGGTTTTGACAGCACAGACAAGAGTAATGCGGGTAAATTAGAGGAGATAGAACAGGCATTGTTCTCCCACGTTGAAAAGTTGGCAGTTTGTTATGGACTTATAAGCACAAGAGCAGGTTCTCCGCTTCATATATTCAAAAATCTACGCATCTGTCAAGACTGCCATTCTGCGATGAAACTAGTTTCTCATGTCTATAATCGAGAAATTGTCATTAGGGATCGCAACCGATTTCATTGTTTCAAGCAAGACGGAGAAAGATTGGACTCTTCTATACTTCTCAGCAAGAGGAGCGACGTGGAAAGAACAGCTACTTGCAGTTTACGGAGGAAGAAGAATTTTGCAGAGGAAGAAGAACTTAAAGTCAGATCATATGATTATAAGATAAAAAGTAGCTCACTCACACTAGACGGCAACTTGGCATGGCGATTTCCAAATAGAGGAAGGGTGAAGTTTCAGTTCCCATTCAAAGAGGCAAGGATCAGAACCATAGAATGCAAAACTGGGACTGCAGCTCAGTCATCTTTGAAAATCCATATCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

235

Amino Acids

26.84

Weight (kDa)

9.42

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Eplus_motif	PF20430	13 - 40	1.5e-07	E+ motif
DYW_deaminase	PF14432	69 - 137	2.2e-26	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022643)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0167151
rosa_multiflora	Rmu_co7972092.1_g000001
rosa_samantha	Rh2BG606900 Rh7AG041900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	266, 543
Acc36I	ACCTGC	1 cut(s)	269
AciI	CCGC	2 cut(s)	194, 287
AclWI	GGATC	2 cut(s)	390, 650
AcoI	YGGCCR	2 cut(s)	31, 126
AcsI	RAATTY	2 cut(s)	36, 499
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	5 cut(s)	239, 301, 406, 631, 691
AhlI	ACTAGT	1 cut(s)	343
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	4 cut(s)	15, 473, 558, 677
AluI	AGCT	4 cut(s)	15, 473, 558, 677
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	390, 650
AoxI	GGCC	2 cut(s)	31, 126
ApeKI	GCWGC	2 cut(s)	146, 674
ApoI	RAATTY	2 cut(s)	36, 499
AsuHPI	GGTGA	1 cut(s)	622
BaeI	ACNNNNGTAYC	2 cut(s)	101, 134
BalI	TGGCCA	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	133, 686
BceAI	ACGGC	1 cut(s)	589
BciT130I	CCWGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	51
BcuI	ACTAGT	1 cut(s)	343
BfaI	CTAG	2 cut(s)	344, 569
BfmI	CTRYAG	1 cut(s)	672
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	2 cut(s)	147, 675
BlsI	GCNGC	2 cut(s)	148, 676
Bme1390I	CCNGG	1 cut(s)	6
BmgBI	CACGTC	1 cut(s)	460
BmrFI	CCNGG	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	1 cut(s)	321
BmuI	ACTGGG	1 cut(s)	675
BpmI	CTGGAG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	670
BseBI	CCWGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMII	CTCAG	2 cut(s)	457, 692
BseNI	ACTGG	1 cut(s)	670
BseRI	GAGGAG	2 cut(s)	221, 466
BseXI	GCAGC	2 cut(s)	133, 686
BshFI	GGCC	2 cut(s)	33, 128
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	122, 682
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	2 cut(s)	122, 682
BsmI	GAATGC	1 cut(s)	662
BsnI	GGCC	2 cut(s)	33, 128
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	3 cut(s)	382, 530, 642
BspACI	CCGC	2 cut(s)	194, 287
BspANI	GGCC	2 cut(s)	33, 128
BspCNI	CTCAG	2 cut(s)	456, 691
BspMAI	CTGCAG	1 cut(s)	676
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	2 cut(s)	390, 650
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	670
BssAI	RCCGGY	1 cut(s)	128
BssMI	GATC	3 cut(s)	382, 530, 642
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	443, 678
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	3 cut(s)	385, 533, 645
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	3 cut(s)	382, 530, 642
BstMWI	GCNNNNNNNGC	1 cut(s)	453
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	2 cut(s)	133, 686
BsuRI	GGCC	2 cut(s)	33, 128
BtgZI	GCGATG	1 cut(s)	350
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	91, 353, 585
CviJI	RGCY	6 cut(s)	15, 33, 128, 473, 558, 677
CviKI_1	RGCY	6 cut(s)	15, 33, 128, 473, 558, 677
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	443, 678
DpnI	GATC	3 cut(s)	384, 532, 644
DpnII	GATC	3 cut(s)	382, 530, 642
EaeI	YGGCCR	2 cut(s)	31, 126
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	4
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	3 cut(s)	94, 356, 588
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FaqI	GGGAC	2 cut(s)	122, 682
FatI	CATG	3 cut(s)	90, 352, 584
FauI	CCCGC	1 cut(s)	187
FauNDI	CATATG	1 cut(s)	535
Fnu4HI	GCNGC	2 cut(s)	147, 675
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	147, 675
FspBI	CTAG	2 cut(s)	344, 569
GluI	GCNGC	2 cut(s)	147, 675
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	33, 128
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	3 cut(s)	94, 356, 588
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	2 cut(s)	530, 647
Hpy188III	TCNNGA	3 cut(s)	320, 365, 705
Hpy8I	GTNNAC	1 cut(s)	485
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	1 cut(s)	600
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	2 cut(s)	234, 459
HpyCH4V	TGCA	4 cut(s)	480, 506, 660, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	453
HpyF3I	CTNAG	2 cut(s)	443, 678
HpySE526I	ACGT	2 cut(s)	234, 459
Hsp92II	CATG	3 cut(s)	94, 356, 588
Kzo9I	GATC	3 cut(s)	382, 530, 642
LmnI	GCTCC	1 cut(s)	453
LpnPI	CCDG	7 cut(s)	18, 39, 142, 150, 203, 264, 651
Lsp1109I	GCAGC	2 cut(s)	133, 686
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	2 cut(s)	344, 569
MaeII	ACGT	2 cut(s)	234, 459
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	3 cut(s)	384, 532, 644
MboI	GATC	3 cut(s)	382, 530, 642
MboII	GAAGA	5 cut(s)	423, 505, 508, 524, 527
MhlI	GDGCHC	1 cut(s)	17
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	4 cut(s)	36, 200, 369, 499
MluNI	TGGCCA	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	6 cut(s)	199, 444, 483, 502, 596, 628
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	1 cut(s)	522
Msp20I	TGGCCA	1 cut(s)	33
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	453
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	3 cut(s)	382, 530, 642
NlaIII	CATG	3 cut(s)	94, 356, 588
NmuCI	GTSAC	1 cut(s)	63
PctI	GAATGC	1 cut(s)	662
PkrI	GCNGC	2 cut(s)	148, 676
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PsiI	TTATAA	2 cut(s)	266, 543
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	676
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	2 cut(s)	147, 675
Sau3AI	GATC	3 cut(s)	382, 530, 642
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	7 cut(s)	17, 237, 283, 462, 475, 560, 679
SfaNI	GCATC	1 cut(s)	321
SfcI	CTRYAG	1 cut(s)	672
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
SpeI	ACTAGT	1 cut(s)	343
Sse9I	AATT	4 cut(s)	36, 200, 369, 499
SsiI	CCGC	2 cut(s)	194, 287
SspMI	CTAG	2 cut(s)	344, 569
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	2 cut(s)	237, 462
TaqI	TCGA	1 cut(s)	364
TasI	AATT	4 cut(s)	36, 200, 369, 499
TatI	WGTACW	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	2 cut(s)	146, 674
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	5 cut(s)	29, 107, 281, 353, 386
TspGWI	ACGGA	2 cut(s)	429, 502
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	2 cut(s)	36, 499
XspI	CTAG	2 cut(s)	344, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.