Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7972092.1

Orthogroup ID

OG0022643

Physical Location & Seq

Genomic Coordinates Forward (+)

69 .. 509

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7972092.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgcctggaatgagctcgctttatgttggtggccaaattcatcagttcagtgctggagacaagtcacacccaaaggcaatggagatttacatgaagttggatgagatgatacaaaagttgagaatggccggttatgtcccaaatgctgctactcaagttttctctggttttgacaacacagacgagagtaatgtggataagttggaggagatagaacaggcattgttctcccacagtgaaaagttggcagtttgttatggacttctaagcacaagagcaggttcgccgcttcacatattcaaaaatctacgcatctgccaagactgtcattctgcgatgaaactagtttctcatgtttataatcgagaaattgtcatcagggatcgcaaccgatttcattgtttcaagcaaggttcttgttcttgctctgattattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

146

Amino Acids

16.59

Weight (kDa)

7.03

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022643)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0167151
rosa_multiflora	Rmu_co7972092.1_g000001
rosa_samantha	Rh2BG606900 Rh7AG041900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
Acc36I	ACCTGC	1 cut(s)	269
AciI	CCGC	1 cut(s)	287
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	2 cut(s)	31, 126
AcsI	RAATTY	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	301, 406
AhlI	ACTAGT	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	2 cut(s)	31, 126
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	36
BaeI	ACNNNNGTAYC	2 cut(s)	101, 134
BalI	TGGCCA	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	51
BcuI	ACTAGT	1 cut(s)	343
BfaI	CTAG	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	2 cut(s)	147, 287
BlsI	GCNGC	2 cut(s)	148, 288
Bme1390I	CCNGG	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	2 cut(s)	33, 128
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	33, 128
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	382
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	2 cut(s)	33, 128
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssMI	GATC	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	236, 326
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	382
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstV1I	GCAGC	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	33, 128
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	55, 241
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	128
CviAII	CATG	2 cut(s)	91, 353
CviJI	RGCY	3 cut(s)	15, 33, 128
CviKI_1	RGCY	3 cut(s)	15, 33, 128
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
EaeI	YGGCCR	2 cut(s)	31, 126
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	4
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	2 cut(s)	94, 356
FaiI	YATR	7 cut(s)	24, 92, 135, 258, 296, 354, 360
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	2 cut(s)	90, 352
Fnu4HI	GCNGC	2 cut(s)	147, 287
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	147, 287
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	2 cut(s)	147, 287
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	33, 128
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	94, 356
HpaII	CCGG	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	1 cut(s)	365
HpyCH4III	ACNGT	2 cut(s)	236, 326
HpyF3I	CTNAG	1 cut(s)	266
Hsp92II	CATG	2 cut(s)	94, 356
Kzo9I	GATC	1 cut(s)	382
LpnPI	CCDG	7 cut(s)	18, 39, 142, 150, 203, 264, 364
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	17
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	2 cut(s)	36, 369
MluNI	TGGCCA	1 cut(s)	33
MmeI	TCCRAC	2 cut(s)	78, 183
MnlI	CCTC	1 cut(s)	199
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	33
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	2 cut(s)	94, 356
NmuCI	GTSAC	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	148, 288
PsiI	TTATAA	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	17
SatI	GCNGC	2 cut(s)	147, 287
Sau3AI	GATC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	3 cut(s)	17, 283, 415
SfaNI	GCATC	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
SpeI	ACTAGT	1 cut(s)	343
Sse9I	AATT	2 cut(s)	36, 369
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	2 cut(s)	236, 326
TaqI	TCGA	1 cut(s)	364
TasI	AATT	2 cut(s)	36, 369
TauI	GCSGC	1 cut(s)	289
TscAI	CASTG	2 cut(s)	55, 241
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	4 cut(s)	29, 107, 353, 386
TspRI	CASTG	2 cut(s)	55, 241
XapI	RAATTY	1 cut(s)	36
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.