Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020471

Physical Location & Seq

Genomic Coordinates Forward (+)

83250785 .. 83254494

Gene Structure 3710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53657

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGATTCTTGGAAAGAACCTAGTGATTGATCCTGTTTTGGAGGAAGAAAGTTACCAAGATGGAAGCTTAAAGCTTACTTGCAGGCCTTCTCGCTATGAAGTCACTCAGCTAACTATGTCAGGGGAATGGTCAACCCCAAAAATTAATGAGTTATTAGAACACTTGTGTCTTTTGTTTGACAGCTTTTGGGACCAAGAGAGTAGAACAACAGAACTTGTGGTTGCAGCTATGAAGACAAGCAAGATGTCCGAGGTCAAGTTACATACATGTATGTTTTCAAGGTTGTTTGAAACTGTAGGTGTGGTACTTTCATATGGCATTGCTGGTAGAAGAGAAAGGGGAGCAAGGGTAGAAGCTCGTGAGCTTAAGAAAGATGATGAAGTGTGGCTGGTCGGGAGAGCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000176 GO:0000177 GO:0000178 GO:0000291 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009791 GO:0009845 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016180 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031126 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034475 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048856 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071051 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090351 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

RNase_PH RNase_PH_C

Protein Analysis

135

Amino Acids

15.43

Weight (kDa)

5.48

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020471)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0317781 RchiOBHm_Chr1g0339171 RchiOBHm_Chr2g0168941
rosa_roxburghii	Rroxscaffold_1G00061500
rosa_samantha	Rh2AG551600 Rh4DG214700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	23
AfaI	GTAC	1 cut(s)	306
AflII	CTTAAG	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	279, 290
AluBI	AGCT	7 cut(s)	66, 73, 109, 183, 227, 356, 364
AluI	AGCT	7 cut(s)	66, 73, 109, 183, 227, 356, 364
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	224
AseI	ATTAAT	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	190
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	294
BfrI	CTTAAG	1 cut(s)	365
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bse3DI	GCAATG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	249
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	1 cut(s)	28
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	325
BstAFI	CTTAAG	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstNSI	RCATGY	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	9 cut(s)	66, 73, 85, 109, 183, 227, 356, 364, 388
CviKI_1	RGCY	9 cut(s)	66, 73, 85, 109, 183, 227, 356, 364, 388
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	190
FaeI	CATG	1 cut(s)	270
FaiI	YATR	8 cut(s)	96, 116, 230, 264, 268, 272, 313, 315
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	266
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HindIII	AAGCTT	2 cut(s)	64, 71
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	359, 394
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	81, 224
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	5 cut(s)	45, 67, 105, 309, 374
Lsp1109I	GCAGC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	3 cut(s)	50, 100, 258
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	3 cut(s)	56, 244, 342
MluCI	AATT	1 cut(s)	141
MnlI	CCTC	2 cut(s)	34, 244
MseI	TTAA	3 cut(s)	68, 144, 366
MspCI	CTTAAG	1 cut(s)	365
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	85
PciI	ACATGT	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	226
PscI	ACATGT	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	190
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SaqAI	TTAA	3 cut(s)	68, 144, 366
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	1 cut(s)	141
SseBI	AGGCCT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	295
TasI	AATT	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	68, 144, 366
Tru9I	TTAA	3 cut(s)	68, 144, 366
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	4 cut(s)	111, 245, 300, 393
Vha464I	CTTAAG	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	144
XceI	RCATGY	1 cut(s)	270
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.