Exosome complex component
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0317781 RchiOBHm_Chr1g0339171 RchiOBHm_Chr2g0168941 |
| rosa_roxburghii | Rroxscaffold_1G00061500 |
| rosa_samantha | Rh2AG551600 Rh4DG214700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AclWI | GGATC | 1 cut(s) | 29 |
| AcsI | RAATTY | 1 cut(s) | 147 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 14, 44, 229 |
| AgsI | TTSAA | 1 cut(s) | 159 |
| AluBI | AGCT | 4 cut(s) | 57, 72, 79, 115 |
| AluI | AGCT | 4 cut(s) | 57, 72, 79, 115 |
| AlwI | GGATC | 1 cut(s) | 29 |
| AoxI | GGCC | 1 cut(s) | 89 |
| ApoI | RAATTY | 1 cut(s) | 147 |
| AspS9I | GGNCC | 1 cut(s) | 171 |
| AsuHPI | GGTGA | 1 cut(s) | 175 |
| AvaII | GGWCC | 1 cut(s) | 171 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BccI | CCATC | 2 cut(s) | 59, 182 |
| BfaI | CTAG | 2 cut(s) | 9, 26 |
| BfmI | CTRYAG | 1 cut(s) | 195 |
| BglII | AGATCT | 1 cut(s) | 179 |
| Bme18I | GGWCC | 1 cut(s) | 171 |
| BmgT120I | GGNCC | 1 cut(s) | 171 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 14, 44, 229 |
| Bse1I | ACTGG | 1 cut(s) | 173 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 14, 44, 229 |
| BseMII | CTCAG | 1 cut(s) | 125 |
| BseNI | ACTGG | 1 cut(s) | 173 |
| BshFI | GGCC | 1 cut(s) | 91 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 14, 44, 229 |
| BsnI | GGCC | 1 cut(s) | 91 |
| Bsp143I | GATC | 2 cut(s) | 34, 179 |
| BspANI | GGCC | 1 cut(s) | 91 |
| BspCNI | CTCAG | 1 cut(s) | 124 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 1 cut(s) | 29 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BsrI | ACTGG | 1 cut(s) | 173 |
| BssMI | GATC | 2 cut(s) | 34, 179 |
| Bst4CI | ACNGT | 1 cut(s) | 205 |
| Bst6I | CTCTTC | 1 cut(s) | 196 |
| BstC8I | GCNNGC | 2 cut(s) | 89, 211 |
| BstDEI | CTNAG | 1 cut(s) | 111 |
| BstKTI | GATC | 2 cut(s) | 37, 182 |
| BstMBI | GATC | 2 cut(s) | 34, 179 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 233 |
| BstSFI | CTRYAG | 1 cut(s) | 195 |
| BstX2I | RGATCY | 1 cut(s) | 179 |
| BstYI | RGATCY | 1 cut(s) | 179 |
| BsuRI | GGCC | 1 cut(s) | 91 |
| Cac8I | GCNNGC | 2 cut(s) | 89, 211 |
| Cfr13I | GGNCC | 1 cut(s) | 171 |
| CviJI | RGCY | 5 cut(s) | 57, 72, 79, 91, 115 |
| CviKI_1 | RGCY | 5 cut(s) | 57, 72, 79, 91, 115 |
| DdeI | CTNAG | 1 cut(s) | 111 |
| DpnI | GATC | 2 cut(s) | 36, 181 |
| DpnII | GATC | 2 cut(s) | 34, 179 |
| Eam1104I | CTCTTC | 1 cut(s) | 196 |
| EarI | CTCTTC | 1 cut(s) | 196 |
| Eco147I | AGGCCT | 1 cut(s) | 91 |
| Eco47I | GGWCC | 1 cut(s) | 171 |
| FaiI | YATR | 3 cut(s) | 102, 122, 153 |
| FspBI | CTAG | 2 cut(s) | 9, 26 |
| HaeIII | GGCC | 1 cut(s) | 91 |
| HincII | GTYRAC | 1 cut(s) | 138 |
| HindII | GTYRAC | 1 cut(s) | 138 |
| HindIII | AAGCTT | 2 cut(s) | 70, 77 |
| HphI | GGTGA | 1 cut(s) | 175 |
| Hpy166II | GTNNAC | 2 cut(s) | 138, 166 |
| Hpy188I | TCNGA | 1 cut(s) | 179 |
| Hpy8I | GTNNAC | 2 cut(s) | 138, 166 |
| HpyAV | CCTTC | 1 cut(s) | 102 |
| HpyCH4III | ACNGT | 1 cut(s) | 205 |
| HpyCH4V | TGCA | 2 cut(s) | 87, 186 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 233 |
| HpyF3I | CTNAG | 1 cut(s) | 111 |
| Kzo9I | GATC | 2 cut(s) | 34, 179 |
| LpnPI | CCDG | 4 cut(s) | 51, 73, 111, 154 |
| MaeI | CTAG | 2 cut(s) | 9, 26 |
| MaeIII | GTNAC | 1 cut(s) | 106 |
| MalI | GATC | 2 cut(s) | 36, 181 |
| MboI | GATC | 2 cut(s) | 34, 179 |
| MboII | GAAGA | 2 cut(s) | 62, 183 |
| MflI | RGATCY | 1 cut(s) | 179 |
| MluCI | AATT | 1 cut(s) | 147 |
| MseI | TTAA | 2 cut(s) | 74, 238 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 233 |
| NdeII | GATC | 2 cut(s) | 34, 179 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NmuCI | GTSAC | 1 cut(s) | 106 |
| PceI | AGGCCT | 1 cut(s) | 91 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 1 cut(s) | 171 |
| PsuI | RGATCY | 1 cut(s) | 179 |
| SaqAI | TTAA | 2 cut(s) | 74, 238 |
| Sau3AI | GATC | 2 cut(s) | 34, 179 |
| Sau96I | GGNCC | 1 cut(s) | 171 |
| SetI | ASST | 6 cut(s) | 27, 59, 74, 81, 117, 165 |
| SfcI | CTRYAG | 1 cut(s) | 195 |
| SinI | GGWCC | 1 cut(s) | 171 |
| Sse9I | AATT | 1 cut(s) | 147 |
| SseBI | AGGCCT | 1 cut(s) | 91 |
| SspMI | CTAG | 2 cut(s) | 9, 26 |
| StuI | AGGCCT | 1 cut(s) | 91 |
| TaaI | ACNGT | 1 cut(s) | 205 |
| TasI | AATT | 1 cut(s) | 147 |
| Tru1I | TTAA | 2 cut(s) | 74, 238 |
| Tru9I | TTAA | 2 cut(s) | 74, 238 |
| TseFI | GTSAC | 1 cut(s) | 106 |
| Tsp45I | GTSAC | 1 cut(s) | 106 |
| TspDTI | ATGAA | 1 cut(s) | 117 |
| VpaK11BI | GGWCC | 1 cut(s) | 171 |
| XapI | RAATTY | 1 cut(s) | 147 |
| XspI | CTAG | 2 cut(s) | 9, 26 |