Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020506

Physical Location & Seq

Genomic Coordinates Forward (+)

88135792 .. 88137053

Gene Structure 1262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54325

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCAGATCCAGCCATGTACGAGTACCATGACTTCCTCCTAAATAACAAACAGCCCCCACACCATCACCTCCTCCTTCATCATCATCATCAGCAGCAGCAGTCACCCTGTCTAGGACCATCACCACCAGCAAAAAGCCAACCCACCACAAAACCACCGGCATCGTCATCGCGTTCTTCGTCGTCTAAACCTGGTCGCGTATTCCCATGCCTCTTCTGCCCTCGCCAGTTCTACACCTCTCAAGCTCTCGGCGGCCACCAAAACGCCCACAAGCGCGAGCGAGCCGCTTCCAGAAACAGACCACCTCTGCTCGGATCAGCCTACCACCAGAACCAGGAGCCCTCTCCCTCTCCGCCGTCGTTTCATCATCACCAGAACCATTATCTGCAGGGACGTCATTTTGATCCCCATCGTCAGGCGGCGTCTCTTGACCTTCAGTATCCAACACCAACAAATGGAGGGCTAATAATCGGCACACCAACAAACACCACTGCCTTCATGGACGACCAGCAGCAACAGATGCAGATGCAGAGCTACTATTGGTTTGATGAGTCGAATGCCAGCAATAGCTTGAATCAGGAGGAGTACCAGTACTACTCCACTCATCCTCTTCCATCTGGGTTTCTTGCGGCCTCTCCTGCTTTCATCTCGACCCCAACTCCAACTCCAACTCCAACTCCAACTACAAGTGCGAGTACCACTACTACTACTACTACTCATGATTCTTATTATTCTGCCCAACCAAATGTGGACCTCACCCTCCGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0010022 GO:0010073 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048507 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.64

Weight (kDa)

7.35

Isoelectric Point (pI)

67.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020506)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0176231
rosa_laevigata	RLG00000022393
rosa_multiflora	Rmu_sc0000405.1_g000015 Rmu_sc0014493.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076660
rosa_wichuraiana	Rw2G055010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	397
AccB7I	CCANNNNNTGG	1 cut(s)	455
AccII	CGCG	3 cut(s)	172, 198, 276
AciI	CCGC	6 cut(s)	252, 285, 353, 419, 629, 763
AclWI	GGATC	3 cut(s)	2, 322, 398
AcoI	YGGCCR	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	419
AcyI	GRCGYC	2 cut(s)	394, 422
AfaI	GTAC	5 cut(s)	20, 26, 587, 593, 697
AfiI	CCNNNNNNNGG	5 cut(s)	113, 311, 334, 415, 455
AgsI	TTSAA	1 cut(s)	574
AjnI	CCWGG	2 cut(s)	190, 333
AluBI	AGCT	3 cut(s)	245, 534, 570
AluI	AGCT	3 cut(s)	245, 534, 570
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	3 cut(s)	2, 322, 398
AoxI	GGCC	2 cut(s)	253, 630
ApeKI	GCWGC	3 cut(s)	94, 97, 511
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	116, 751
AsuHPI	GGTGA	5 cut(s)	59, 96, 114, 362, 748
AvaII	GGWCC	2 cut(s)	116, 751
BanII	GRGCYC	1 cut(s)	342
BarI	GAAGNNNNNNTAC	2 cut(s)	17, 49
BbvI	GCAGC	3 cut(s)	106, 109, 523
BccI	CCATC	4 cut(s)	72, 127, 417, 622
BceAI	ACGGC	1 cut(s)	340
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BciT130I	CCWGG	2 cut(s)	192, 335
BciVI	GTATCC	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	386
BfuI	GTATCC	1 cut(s)	450
BisI	GCNGC	7 cut(s)	95, 98, 253, 285, 420, 512, 630
BlsI	GCNGC	7 cut(s)	96, 99, 254, 286, 421, 513, 631
BmcAI	AGTACT	1 cut(s)	593
Bme1390I	CCNGG	2 cut(s)	192, 335
Bme18I	GGWCC	2 cut(s)	116, 751
BmgT120I	GGNCC	2 cut(s)	116, 751
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	2 cut(s)	192, 335
BmsI	GCATC	3 cut(s)	170, 510, 516
BpuEI	CTTGAG	1 cut(s)	225
BsaBI	GATNNNNATC	1 cut(s)	408
BsaHI	GRCGYC	2 cut(s)	394, 422
Bsc4I	CCNNNNNNNGG	5 cut(s)	113, 311, 334, 415, 455
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	226, 589
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	2 cut(s)	192, 335
BseGI	GGATG	1 cut(s)	604
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	5 cut(s)	113, 311, 334, 415, 455
BseNI	ACTGG	2 cut(s)	226, 589
BseRI	GAGGAG	2 cut(s)	62, 596
BseXI	GCAGC	3 cut(s)	106, 109, 523
Bsh1236I	CGCG	3 cut(s)	172, 198, 276
BshFI	GGCC	2 cut(s)	255, 632
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	5 cut(s)	113, 311, 334, 415, 455
BsmAI	GTCTC	1 cut(s)	429
BsmBI	CGTCTC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	255, 632
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	7, 314, 403
BspACI	CCGC	6 cut(s)	252, 285, 353, 419, 629, 763
BspANI	GGCC	2 cut(s)	255, 632
BspFNI	CGCG	3 cut(s)	172, 198, 276
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	390
BspPI	GGATC	3 cut(s)	2, 322, 398
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	226, 589
BssAI	RCCGGY	1 cut(s)	157
BssMI	GATC	3 cut(s)	7, 314, 403
BssNI	GRCGYC	2 cut(s)	394, 422
Bst2UI	CCWGG	2 cut(s)	192, 335
Bst6I	CTCTTC	2 cut(s)	218, 615
BstACI	GRCGYC	2 cut(s)	394, 422
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstC8I	GCNNGC	3 cut(s)	278, 282, 562
BstF5I	GGATG	1 cut(s)	604
BstFNI	CGCG	3 cut(s)	172, 198, 276
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	3 cut(s)	10, 317, 406
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	3 cut(s)	7, 314, 403
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 216, 520, 638
BstNI	CCWGG	2 cut(s)	192, 335
BstSCI	CCNGG	2 cut(s)	190, 333
BstSFI	CTRYAG	1 cut(s)	386
BstUI	CGCG	3 cut(s)	172, 198, 276
BstV1I	GCAGC	3 cut(s)	106, 109, 523
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	255, 632
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	604
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	3 cut(s)	278, 282, 562
CciI	TCATGA	1 cut(s)	718
CfoI	GCGC	1 cut(s)	276
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	116, 751
CseI	GACGC	1 cut(s)	411
CsiI	ACCWGGT	1 cut(s)	190
Csp6I	GTAC	5 cut(s)	19, 25, 586, 592, 696
CviAII	CATG	5 cut(s)	16, 29, 207, 499, 719
CviQI	GTAC	5 cut(s)	19, 25, 586, 592, 696
DpnI	GATC	3 cut(s)	9, 316, 405
DpnII	GATC	3 cut(s)	7, 314, 403
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	218, 615
EarI	CTCTTC	2 cut(s)	218, 615
EciI	GGCGGA	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	2 cut(s)	116, 751
Eco57I	CTGAAG	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	190, 333
EcoT38I	GRGCYC	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	429
FaeI	CATG	5 cut(s)	19, 32, 210, 502, 722
FaiI	YATR	6 cut(s)	17, 30, 208, 500, 720, 769
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	5 cut(s)	15, 28, 206, 498, 718
Fnu4HI	GCNGC	7 cut(s)	95, 98, 253, 285, 420, 512, 630
FokI	GGATG	1 cut(s)	591
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	7 cut(s)	95, 98, 253, 285, 420, 512, 630
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	7 cut(s)	95, 98, 253, 285, 420, 512, 630
HaeIII	GGCC	2 cut(s)	255, 632
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	1 cut(s)	276
Hin1I	GRCGYC	2 cut(s)	394, 422
Hin1II	CATG	5 cut(s)	19, 32, 210, 502, 722
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	551, 574, 722
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	5 cut(s)	59, 96, 114, 362, 748
Hpy166II	GTNNAC	1 cut(s)	751
Hpy188I	TCNGA	1 cut(s)	314
Hpy188III	TCNNGA	5 cut(s)	291, 428, 578, 649, 719
Hpy8I	GTNNAC	1 cut(s)	751
Hpy99I	CGWCG	2 cut(s)	184, 361
HpyAV	CCTTC	3 cut(s)	86, 443, 505
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	3 cut(s)	388, 523, 529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 216, 520, 638
HpySE526I	ACGT	1 cut(s)	394
Hsp92I	GRCGYC	2 cut(s)	394, 422
Hsp92II	CATG	5 cut(s)	19, 32, 210, 502, 722
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	7, 314, 403
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	3 cut(s)	106, 109, 523
LweI	GCATC	3 cut(s)	170, 510, 516
MabI	ACCWGGT	1 cut(s)	190
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	3 cut(s)	9, 316, 405
MboI	GATC	3 cut(s)	7, 314, 403
MboII	GAAGA	3 cut(s)	168, 205, 602
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	342
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	5 cut(s)	467, 686, 692, 698, 704
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	192, 335
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	2 cut(s)	192, 335
MvnI	CGCG	3 cut(s)	172, 198, 276
MwoI	GCNNNNNNNGC	4 cut(s)	11, 216, 520, 638
NdeII	GATC	3 cut(s)	7, 314, 403
NlaIII	CATG	5 cut(s)	19, 32, 210, 502, 722
NlaIV	GGNNCC	1 cut(s)	339
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	102
PagI	TCATGA	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	574, 722
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	7 cut(s)	96, 99, 254, 286, 421, 513, 631
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Psp6I	CCWGG	2 cut(s)	190, 333
PspGI	CCWGG	2 cut(s)	190, 333
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	2 cut(s)	116, 751
PstI	CTGCAG	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	5 cut(s)	20, 26, 587, 593, 697
RsaNI	GTAC	5 cut(s)	19, 25, 586, 592, 696
SatI	GCNGC	7 cut(s)	95, 98, 253, 285, 420, 512, 630
Sau3AI	GATC	3 cut(s)	7, 314, 403
Sau96I	GGNCC	2 cut(s)	116, 751
ScaI	AGTACT	1 cut(s)	593
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	2 cut(s)	192, 335
SduI	GDGCHC	1 cut(s)	342
SexAI	ACCWGGT	1 cut(s)	190
SfaNI	GCATC	3 cut(s)	170, 510, 516
SfcI	CTRYAG	1 cut(s)	386
SinI	GGWCC	2 cut(s)	116, 751
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SsiI	CCGC	6 cut(s)	252, 285, 353, 419, 629, 763
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	2 cut(s)	190, 333
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	2 cut(s)	554, 650
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	4 cut(s)	255, 287, 422, 632
TfiI	GAWTC	2 cut(s)	574, 722
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	3 cut(s)	94, 97, 511
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	4 cut(s)	68, 353, 487, 634
TspRI	CASTG	1 cut(s)	496
Van91I	CCANNNNNTGG	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	116, 751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XspI	CTAG	1 cut(s)	113
ZraI	GACGTC	1 cut(s)	395
ZrmI	AGTACT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.