Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0020506

Physical Location & Seq

Genomic Coordinates Forward (+)

83076554 .. 83077342

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022393

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCAGATCCAGCAGCAGCAGCCATGTACGAGTACCATGACTTCCTCCTAAATAACAAACAGCCCCCACACCATCACCATCACCATCACATCCTCCTTCATCATCAGCAGCAGCAGCAGCAGCAGCAGTCACCTTGTCTAGGGCCATCACCACCAGCAAAAAGCCAACCCACCATAAAACCACCAGCATCATCATCGCGTTCTTCGTCGTCTAAACCTGGTCGCGTATTCCCATGCCTCTTCTGCCCTCGCCAGTTCTACACCTCTCAAGCTCTCGGCGGCCACCAAAACGCCCACAAGCGCGAGCGAGCCGCTTCCAGAAACAGACCACCTCTGCTCGGATCAGCCTACCACCAGAACCAGCCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCGCCGTCGTTTCATCATCACCAGAACCATTATCTGCAGGGTCATTTTGATCACTATCGTCAGTCGGCGTCTCTTGACCTTCAGTATCCAACACCAACAAATGGAGGGCTAATCGGCACACCAACAAACACCACTGCCTTAAAGGACGACCAGCAGCAACAGATGCAGATGCAGATGCAGAGCTACTATTGGCTTGATGAGTCGAATGCCAACAATAGCTTGAATCAGGAGGAGTATCAGTACTACTCCACTCATCCTCTTCCATCTGGGTTTCTTGCGGCCTCTCCTGCTTTCATCTCGACCCCAACTCCAACTACAAGTGCGAGTACCAGTACTACTACTCATGATTCTTATTATTCTGCCCAACCAAATGTGGACCTCACCCTCCGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0010022 GO:0010073 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048507 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

29.3

Weight (kDa)

7.89

Isoelectric Point (pI)

78.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020506)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0176231
rosa_laevigata	RLG00000022393
rosa_multiflora	Rmu_sc0000405.1_g000015 Rmu_sc0014493.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076660
rosa_wichuraiana	Rw2G055010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccII	CGCG	3 cut(s)	199, 225, 303
AciI	CCGC	5 cut(s)	279, 312, 395, 671, 781
AclWI	GGATC	2 cut(s)	2, 349
AcoI	YGGCCR	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	5 cut(s)	29, 35, 635, 721, 727
AfiI	CCNNNNNNNGG	3 cut(s)	140, 338, 494
AgsI	TTSAA	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	3 cut(s)	272, 576, 612
AluI	AGCT	3 cut(s)	272, 576, 612
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	2 cut(s)	2, 349
AoxI	GGCC	3 cut(s)	143, 280, 672
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	143, 769
AsuHPI	GGTGA	6 cut(s)	68, 74, 123, 141, 404, 766
AvaII	GGWCC	1 cut(s)	769
BarI	GAAGNNNNNNTAC	2 cut(s)	26, 58
BccI	CCATC	5 cut(s)	81, 87, 93, 154, 664
BceAI	ACGGC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciT130I	CCWGG	1 cut(s)	219
BciVI	GTATCC	1 cut(s)	489
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	489
BmcAI	AGTACT	2 cut(s)	635, 727
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	769
BmgT120I	GGNCC	2 cut(s)	143, 769
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	4 cut(s)	197, 546, 552, 558
BpuEI	CTTGAG	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	461
BsaXI	ACNNNNNCTCC	4 cut(s)	617, 647, 685, 715
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 338, 494
Bse1I	ACTGG	2 cut(s)	253, 723
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	90, 646
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	3 cut(s)	140, 338, 494
BseNI	ACTGG	2 cut(s)	253, 723
BseRI	GAGGAG	1 cut(s)	638
Bsh1236I	CGCG	3 cut(s)	199, 225, 303
BshFI	GGCC	3 cut(s)	145, 282, 674
BslI	CCNNNNNNNGG	3 cut(s)	140, 338, 494
BsmAI	GTCTC	1 cut(s)	468
BsmBI	CGTCTC	1 cut(s)	468
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	3 cut(s)	145, 282, 674
Bsp143I	GATC	3 cut(s)	7, 341, 442
BspACI	CCGC	5 cut(s)	279, 312, 395, 671, 781
BspANI	GGCC	3 cut(s)	145, 282, 674
BspFNI	CGCG	3 cut(s)	199, 225, 303
BspHI	TCATGA	1 cut(s)	736
BspMAI	CTGCAG	1 cut(s)	432
BspPI	GGATC	2 cut(s)	2, 349
BsrI	ACTGG	2 cut(s)	253, 723
BssMI	GATC	3 cut(s)	7, 341, 442
BssNI	GRCGYC	1 cut(s)	461
Bst2UI	CCWGG	1 cut(s)	219
Bst6I	CTCTTC	2 cut(s)	245, 657
BstACI	GRCGYC	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	556
BstC8I	GCNNGC	2 cut(s)	305, 309
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	90, 646
BstFNI	CGCG	3 cut(s)	199, 225, 303
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	3 cut(s)	10, 344, 445
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	3 cut(s)	7, 341, 442
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 20, 115, 118, 121, 124, 243, 556, 680
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	428
BstUI	CGCG	3 cut(s)	199, 225, 303
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	3 cut(s)	145, 282, 674
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	90, 646
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	305, 309
CciI	TCATGA	1 cut(s)	736
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	143, 769
CseI	GACGC	1 cut(s)	450
CsiI	ACCWGGT	1 cut(s)	217
Csp6I	GTAC	5 cut(s)	28, 34, 634, 720, 726
CviAII	CATG	4 cut(s)	25, 38, 234, 737
CviQI	GTAC	5 cut(s)	28, 34, 634, 720, 726
DpnI	GATC	3 cut(s)	9, 343, 444
DpnII	GATC	3 cut(s)	7, 341, 442
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	2 cut(s)	245, 657
EarI	CTCTTC	2 cut(s)	245, 657
EciI	GGCGGA	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	769
Eco57I	CTGAAG	1 cut(s)	458
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	468
FaeI	CATG	4 cut(s)	28, 41, 237, 740
FaiI	YATR	6 cut(s)	26, 39, 176, 235, 738, 787
FatI	CATG	4 cut(s)	24, 37, 233, 736
FbaI	TGATCA	1 cut(s)	442
FokI	GGATG	2 cut(s)	77, 633
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	145, 282, 674
HgaI	GACGC	1 cut(s)	450
HhaI	GCGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	4 cut(s)	28, 41, 237, 740
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	593, 616, 740
HphI	GGTGA	6 cut(s)	68, 74, 123, 141, 404, 766
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	5 cut(s)	318, 467, 620, 691, 737
Hpy8I	GTNNAC	1 cut(s)	769
Hpy99I	CGWCG	2 cut(s)	211, 403
HpyAV	CCTTC	2 cut(s)	107, 482
HpyCH4V	TGCA	4 cut(s)	430, 559, 565, 571
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 20, 115, 118, 121, 124, 243, 556, 680
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	28, 41, 237, 740
HspAI	GCGC	1 cut(s)	301
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	3 cut(s)	7, 341, 442
LweI	GCATC	4 cut(s)	197, 546, 552, 558
MabI	ACCWGGT	1 cut(s)	217
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	3 cut(s)	9, 343, 444
MboI	GATC	3 cut(s)	7, 341, 442
MboII	GAAGA	3 cut(s)	195, 232, 644
MflI	RGATCY	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	2 cut(s)	506, 728
MseI	TTAA	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	604
MvaI	CCWGG	1 cut(s)	219
MvnI	CGCG	3 cut(s)	199, 225, 303
MwoI	GCNNNNNNNGC	9 cut(s)	11, 20, 115, 118, 121, 124, 243, 556, 680
NdeII	GATC	3 cut(s)	7, 341, 442
NlaIII	CATG	4 cut(s)	28, 41, 237, 740
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	129
PagI	TCATGA	1 cut(s)	736
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PctI	GAATGC	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	616, 740
PflMI	CCANNNNNTGG	1 cut(s)	494
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspPI	GGNCC	2 cut(s)	143, 769
PstI	CTGCAG	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	5 cut(s)	29, 35, 635, 721, 727
RsaNI	GTAC	5 cut(s)	28, 34, 634, 720, 726
SaqAI	TTAA	1 cut(s)	533
Sau3AI	GATC	3 cut(s)	7, 341, 442
Sau96I	GGNCC	2 cut(s)	143, 769
ScaI	AGTACT	2 cut(s)	635, 727
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	9 cut(s)	136, 220, 266, 274, 334, 474, 578, 614, 774
SexAI	ACCWGGT	1 cut(s)	217
SfaNI	GCATC	4 cut(s)	197, 546, 552, 558
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	769
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
SsiI	CCGC	5 cut(s)	279, 312, 395, 671, 781
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	217
TaqI	TCGA	2 cut(s)	596, 692
TatI	WGTACW	2 cut(s)	633, 725
TauI	GCSGC	3 cut(s)	282, 314, 674
TfiI	GAWTC	2 cut(s)	616, 740
Tru1I	TTAA	1 cut(s)	533
Tru9I	TTAA	1 cut(s)	533
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	3 cut(s)	89, 395, 676
TspRI	CASTG	1 cut(s)	532
Van91I	CCANNNNNTGG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	769
XagI	CCTNNNNNAGG	1 cut(s)	138
XspI	CTAG	1 cut(s)	140
ZrmI	AGTACT	2 cut(s)	635, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.