Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0020506

Physical Location & Seq

Genomic Coordinates Reverse (-)

415002 .. 416135

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTACGAGTACCATGACTTCCTCCTAAATAACGAACAGCCCCCACACCATCACCTCCTCCTTCATCATCATCATCATCAGCAACAGCAGTCACCTTGTCTAGGGCCATCACCACCAGCAAGCCAACCCACCACAAAACCACCAGCATCATCATCGCGTTCTTCGTCGTCTAAACCTGGTCGCGTATTCCCATGCCTCTTCTGCCCTCGCCAGTTCTACACCTCTCAAGCTCTCGGCGGCCACCAAAACGCCCACAAGCGCGAGCGAGCGGCTTCCAGAAACAGACCACCTCTGCTCGGATCAGCCTACCACGGCCACCACCAGAACCAGCCCTCTCCCTCTCCCTCTCCGCCGTCGTTTCATCATCACCAGAACCATTATCTGCAGGGCCATGTTGATCACCATCGTCAGGCGGCGTCTCTTGACCTTCAGTATCCAACACCAACAAATGGAGGGCTAATCGGCACACCAACAGACACCACTGCCTTAATGGACGACCAGCAGCAACAGATGCAGAGCTACTATTGGCTTGATGAGTCGAATGCCAACAATAGCTTGAATCAGGAGGAGTACCAGTACTACTCCACTCATCCTCTTCCATCTGGGTTTCTTGCGGCCTCTCCTGCTTTCATCCAAACCCCAACTCCAACTACAAGTGCGACTACCAGTACTACTACTCATGATTCTTATTATTCTGCCCAACCAAATGTGGACCTCACCCTCCGCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0010022 GO:0010073 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048507 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

27.22

Weight (kDa)

6.75

Isoelectric Point (pI)

69.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020506)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0176231
rosa_laevigata	RLG00000022393
rosa_multiflora	Rmu_sc0000405.1_g000015 Rmu_sc0014493.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076660
rosa_wichuraiana	Rw2G055010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccBSI	CCGCTC	1 cut(s)	269
AccII	CGCG	3 cut(s)	157, 183, 261
AciI	CCGC	6 cut(s)	237, 269, 350, 413, 614, 724
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	2 cut(s)	238, 313
AcuI	CTGAAG	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	416
AfaI	GTAC	5 cut(s)	5, 11, 572, 578, 670
AfiI	CCNNNNNNNGG	4 cut(s)	101, 296, 409, 449
AgsI	TTSAA	1 cut(s)	559
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	3 cut(s)	230, 519, 555
AluI	AGCT	3 cut(s)	230, 519, 555
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	5 cut(s)	104, 238, 313, 388, 615
ApeKI	GCWGC	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	3 cut(s)	104, 388, 712
AsuHPI	GGTGA	6 cut(s)	44, 84, 102, 359, 392, 709
AvaII	GGWCC	1 cut(s)	712
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	4 cut(s)	57, 115, 411, 607
BceAI	ACGGC	2 cut(s)	328, 337
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BciT130I	CCWGG	1 cut(s)	177
BciVI	GTATCC	1 cut(s)	444
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	383
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	5 cut(s)	238, 270, 414, 503, 615
BlsI	GCNGC	5 cut(s)	239, 271, 415, 504, 616
BmcAI	AGTACT	2 cut(s)	578, 670
Bme1390I	CCNGG	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	712
BmgT120I	GGNCC	3 cut(s)	104, 388, 712
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	2 cut(s)	155, 501
BpuEI	CTTGAG	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	310
BsaXI	ACNNNNNCTCC	4 cut(s)	560, 590, 628, 658
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 296, 409, 449
Bse1I	ACTGG	3 cut(s)	211, 574, 666
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	2 cut(s)	589, 630
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	101, 296, 409, 449
BseNI	ACTGG	3 cut(s)	211, 574, 666
BseRI	GAGGAG	2 cut(s)	47, 581
BseXI	GCAGC	1 cut(s)	514
Bsh1236I	CGCG	3 cut(s)	157, 183, 261
BshFI	GGCC	5 cut(s)	106, 240, 315, 390, 617
BslI	CCNNNNNNNGG	4 cut(s)	101, 296, 409, 449
BsmAI	GTCTC	1 cut(s)	423
BsmBI	CGTCTC	1 cut(s)	423
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	5 cut(s)	106, 240, 315, 390, 617
Bsp143I	GATC	2 cut(s)	299, 397
BspACI	CCGC	6 cut(s)	237, 269, 350, 413, 614, 724
BspANI	GGCC	5 cut(s)	106, 240, 315, 390, 617
BspFNI	CGCG	3 cut(s)	157, 183, 261
BspHI	TCATGA	1 cut(s)	679
BspMAI	CTGCAG	1 cut(s)	387
BspPI	GGATC	1 cut(s)	307
BsrBI	CCGCTC	1 cut(s)	269
BsrI	ACTGG	3 cut(s)	211, 574, 666
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	299, 397
BssNI	GRCGYC	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	177
Bst6I	CTCTTC	2 cut(s)	203, 600
BstACI	GRCGYC	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstC8I	GCNNGC	3 cut(s)	121, 263, 267
BstDSI	CCRYGG	1 cut(s)	310
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	589, 630
BstFNI	CGCG	3 cut(s)	157, 183, 261
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	2 cut(s)	302, 400
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	2 cut(s)	299, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 511, 623
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	383
BstUI	CGCG	3 cut(s)	157, 183, 261
BstV1I	GCAGC	1 cut(s)	514
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	5 cut(s)	106, 240, 315, 390, 617
BtgI	CCRYGG	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	589, 630
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	3 cut(s)	121, 263, 267
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	3 cut(s)	104, 388, 712
CseI	GACGC	1 cut(s)	405
CsiI	ACCWGGT	1 cut(s)	175
Csp6I	GTAC	5 cut(s)	4, 10, 571, 577, 669
CviAII	CATG	4 cut(s)	14, 192, 392, 680
CviQI	GTAC	5 cut(s)	4, 10, 571, 577, 669
DpnI	GATC	2 cut(s)	301, 399
DpnII	GATC	2 cut(s)	299, 397
EaeI	YGGCCR	2 cut(s)	238, 313
Eam1104I	CTCTTC	2 cut(s)	203, 600
EarI	CTCTTC	2 cut(s)	203, 600
EciI	GGCGGA	2 cut(s)	339, 713
Eco47I	GGWCC	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	413
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	4 cut(s)	17, 195, 395, 683
FaiI	YATR	5 cut(s)	15, 193, 393, 681, 730
FatI	CATG	4 cut(s)	13, 191, 391, 679
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	5 cut(s)	238, 270, 414, 503, 615
FokI	GGATG	2 cut(s)	576, 617
Fsp4HI	GCNGC	5 cut(s)	238, 270, 414, 503, 615
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	5 cut(s)	238, 270, 414, 503, 615
HaeIII	GGCC	5 cut(s)	106, 240, 315, 390, 617
HgaI	GACGC	1 cut(s)	405
HhaI	GCGC	1 cut(s)	261
Hin1I	GRCGYC	1 cut(s)	416
Hin1II	CATG	4 cut(s)	17, 195, 395, 683
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HinfI	GANTC	3 cut(s)	536, 559, 683
HphI	GGTGA	6 cut(s)	44, 84, 102, 359, 392, 709
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	1 cut(s)	299
Hpy188III	TCNNGA	4 cut(s)	276, 422, 563, 680
Hpy8I	GTNNAC	1 cut(s)	712
Hpy99I	CGWCG	2 cut(s)	169, 358
HpyAV	CCTTC	2 cut(s)	71, 437
HpyCH4V	TGCA	2 cut(s)	385, 514
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 511, 623
Hsp92I	GRCGYC	1 cut(s)	416
Hsp92II	CATG	4 cut(s)	17, 195, 395, 683
HspAI	GCGC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	299, 397
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	155, 501
MabI	ACCWGGT	1 cut(s)	175
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	2 cut(s)	301, 399
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	2 cut(s)	299, 397
MboII	GAAGA	3 cut(s)	153, 190, 587
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	2 cut(s)	461, 671
MseI	TTAA	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	3 cut(s)	157, 183, 261
MwoI	GCNNNNNNNGC	3 cut(s)	201, 511, 623
NdeII	GATC	2 cut(s)	299, 397
NlaIII	CATG	4 cut(s)	17, 195, 395, 683
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	90
PagI	TCATGA	1 cut(s)	679
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	2 cut(s)	559, 683
PflMI	CCANNNNNTGG	1 cut(s)	449
PkrI	GCNGC	5 cut(s)	239, 271, 415, 504, 616
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspPI	GGNCC	3 cut(s)	104, 388, 712
PstI	CTGCAG	1 cut(s)	387
RsaI	GTAC	5 cut(s)	5, 11, 572, 578, 670
RsaNI	GTAC	5 cut(s)	4, 10, 571, 577, 669
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	5 cut(s)	238, 270, 414, 503, 615
Sau3AI	GATC	2 cut(s)	299, 397
Sau96I	GGNCC	3 cut(s)	104, 388, 712
ScaI	AGTACT	2 cut(s)	578, 670
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	177
SexAI	ACCWGGT	1 cut(s)	175
SfaNI	GCATC	2 cut(s)	155, 501
SfcI	CTRYAG	1 cut(s)	383
SinI	GGWCC	1 cut(s)	712
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
SsiI	CCGC	6 cut(s)	237, 269, 350, 413, 614, 724
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	175
TaqI	TCGA	1 cut(s)	539
TatI	WGTACW	2 cut(s)	576, 668
TauI	GCSGC	4 cut(s)	240, 272, 416, 617
TfiI	GAWTC	2 cut(s)	559, 683
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	3 cut(s)	53, 350, 619
TspRI	CASTG	1 cut(s)	487
Van91I	CCANNNNNTGG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	712
XagI	CCTNNNNNAGG	1 cut(s)	99
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XspI	CTAG	1 cut(s)	101
ZrmI	AGTACT	2 cut(s)	578, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.