Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0020506

Physical Location & Seq

Genomic Coordinates Forward (+)

82568320 .. 82569087

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G055010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCAGATCCAGCCATGTACGAGTACCATGACTTCCTCCTAAATAACAAACAGCCCCCACACCATCACCTCCTCCTCCATCATCATCATCATCAGCAGCAGCAGTCACCCTGTCTAGGGCCATCACCACCAGCAAAAAGCCAACCCACCACAAAACCACCGGCATCATCATCGCGTTCTTCGTCGTCTAAACCTGGTCGCGTATTCCCATGCCTCTTCTGCCCTCGCCAGTTCTACACCTCTCAAGCTCTCGGCGGCCACCAAAACGCCCACAAGCGAGAGCGAGCCGCTTCCAGAAACAGACCACCTCTGCTCGGATCAGCCTACCACCAGAACCAGGAGCCCTCTCCCTCTCCGCCGTCGTTTCATCATCACCAGAACCATTATCTGCAGGGACGTCATTTTGATCCCCATCGTCAGGCGGCGTCTCTTGACCGTCAGTATCCAACACCAACAAATGGAGGGCTAATAATCGGCACACCAACAAACACCACTGCCTTAATGGACGACCAGCAGCAACAGATGCAGATGCAGAGCTACTATTGTTTTGATGAGTCGAATGCCAGCAATAGCTTGAATCAGGAGGAGTACCAGTACTACTCCACTCATCCTCTTCCATCTGGGTTTCTTGCGGCCTCTCCTGCTTTCATCTCGACCCCAACTCCAACTCCAACTACAAGTGCGAGTACCAGTACTACTACTACTACTACTACTCATGATTCTTATTATTCTGCCCAACCAAATGTGGACCTCACCCTCCGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0010022 GO:0010073 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048507 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.49

Weight (kDa)

7.85

Isoelectric Point (pI)

67.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020506)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0176231
rosa_laevigata	RLG00000022393
rosa_multiflora	Rmu_sc0000405.1_g000015 Rmu_sc0014493.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076660
rosa_wichuraiana	Rw2G055010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	400
AccB7I	CCANNNNNTGG	1 cut(s)	458
AccII	CGCG	2 cut(s)	175, 201
AciI	CCGC	6 cut(s)	255, 288, 356, 422, 632, 760
AclWI	GGATC	3 cut(s)	2, 325, 401
AcoI	YGGCCR	1 cut(s)	256
AcyI	GRCGYC	2 cut(s)	397, 425
AfaI	GTAC	6 cut(s)	20, 26, 590, 596, 688, 694
AfiI	CCNNNNNNNGG	6 cut(s)	116, 117, 314, 337, 418, 458
AgsI	TTSAA	1 cut(s)	577
AjnI	CCWGG	2 cut(s)	193, 336
AluBI	AGCT	3 cut(s)	248, 537, 573
AluI	AGCT	3 cut(s)	248, 537, 573
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	3 cut(s)	2, 325, 401
AoxI	GGCC	3 cut(s)	119, 256, 633
ApeKI	GCWGC	3 cut(s)	97, 100, 514
AspS9I	GGNCC	2 cut(s)	119, 748
AsuHPI	GGTGA	5 cut(s)	59, 99, 117, 365, 745
AvaII	GGWCC	1 cut(s)	748
BanII	GRGCYC	1 cut(s)	345
BarI	GAAGNNNNNNTAC	2 cut(s)	17, 49
BbvI	GCAGC	3 cut(s)	109, 112, 526
BccI	CCATC	5 cut(s)	72, 87, 130, 420, 625
BceAI	ACGGC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	153, 187
BciT130I	CCWGG	2 cut(s)	195, 338
BciVI	GTATCC	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	453
BisI	GCNGC	7 cut(s)	98, 101, 256, 288, 423, 515, 633
BlsI	GCNGC	7 cut(s)	99, 102, 257, 289, 424, 516, 634
BmcAI	AGTACT	2 cut(s)	596, 694
Bme1390I	CCNGG	2 cut(s)	195, 338
Bme18I	GGWCC	1 cut(s)	748
BmgT120I	GGNCC	2 cut(s)	119, 748
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	2 cut(s)	195, 338
BmsI	GCATC	3 cut(s)	173, 513, 519
BpuEI	CTTGAG	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	411
BsaHI	GRCGYC	2 cut(s)	397, 425
BsaXI	ACNNNNNCTCC	6 cut(s)	578, 608, 646, 652, 676, 682
Bsc4I	CCNNNNNNNGG	6 cut(s)	116, 117, 314, 337, 418, 458
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	3 cut(s)	229, 592, 690
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	2 cut(s)	195, 338
BseGI	GGATG	1 cut(s)	607
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	6 cut(s)	116, 117, 314, 337, 418, 458
BseNI	ACTGG	3 cut(s)	229, 592, 690
BseRI	GAGGAG	3 cut(s)	62, 65, 599
BseXI	GCAGC	3 cut(s)	109, 112, 526
Bsh1236I	CGCG	2 cut(s)	175, 201
BshFI	GGCC	3 cut(s)	121, 258, 635
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	6 cut(s)	116, 117, 314, 337, 418, 458
BsmAI	GTCTC	1 cut(s)	432
BsmBI	CGTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	408
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	3 cut(s)	121, 258, 635
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	3 cut(s)	7, 317, 406
BspACI	CCGC	6 cut(s)	255, 288, 356, 422, 632, 760
BspANI	GGCC	3 cut(s)	121, 258, 635
BspFNI	CGCG	2 cut(s)	175, 201
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	393
BspPI	GGATC	3 cut(s)	2, 325, 401
BsrFI	RCCGGY	1 cut(s)	160
BsrI	ACTGG	3 cut(s)	229, 592, 690
BssAI	RCCGGY	1 cut(s)	160
BssMI	GATC	3 cut(s)	7, 317, 406
BssNI	GRCGYC	2 cut(s)	397, 425
Bst2UI	CCWGG	2 cut(s)	195, 338
Bst4CI	ACNGT	1 cut(s)	437
Bst6I	CTCTTC	2 cut(s)	221, 618
BstACI	GRCGYC	2 cut(s)	397, 425
BstAPI	GCANNNNNTGC	1 cut(s)	523
BstC8I	GCNNGC	2 cut(s)	285, 565
BstF5I	GGATG	1 cut(s)	607
BstFNI	CGCG	2 cut(s)	175, 201
BstKTI	GATC	3 cut(s)	10, 320, 409
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	3 cut(s)	7, 317, 406
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 219, 523, 641
BstNI	CCWGG	2 cut(s)	195, 338
BstSCI	CCNGG	2 cut(s)	193, 336
BstSFI	CTRYAG	1 cut(s)	389
BstUI	CGCG	2 cut(s)	175, 201
BstV1I	GCAGC	3 cut(s)	109, 112, 526
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	121, 258, 635
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	607
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	285, 565
CciI	TCATGA	1 cut(s)	715
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	119, 748
CseI	GACGC	1 cut(s)	414
CsiI	ACCWGGT	1 cut(s)	193
Csp6I	GTAC	6 cut(s)	19, 25, 589, 595, 687, 693
CviAII	CATG	4 cut(s)	16, 29, 210, 716
CviQI	GTAC	6 cut(s)	19, 25, 589, 595, 687, 693
DpnI	GATC	3 cut(s)	9, 319, 408
DpnII	GATC	3 cut(s)	7, 317, 406
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	2 cut(s)	221, 618
EarI	CTCTTC	2 cut(s)	221, 618
EciI	GGCGGA	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	748
EcoRII	CCWGG	2 cut(s)	193, 336
EcoT38I	GRGCYC	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	432
FaeI	CATG	4 cut(s)	19, 32, 213, 719
FaiI	YATR	5 cut(s)	17, 30, 211, 717, 766
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	4 cut(s)	15, 28, 209, 715
Fnu4HI	GCNGC	7 cut(s)	98, 101, 256, 288, 423, 515, 633
FokI	GGATG	1 cut(s)	594
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	7 cut(s)	98, 101, 256, 288, 423, 515, 633
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	7 cut(s)	98, 101, 256, 288, 423, 515, 633
HaeIII	GGCC	3 cut(s)	121, 258, 635
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	414
Hin1I	GRCGYC	2 cut(s)	397, 425
Hin1II	CATG	4 cut(s)	19, 32, 213, 719
HinfI	GANTC	3 cut(s)	554, 577, 719
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	5 cut(s)	59, 99, 117, 365, 745
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	5 cut(s)	294, 431, 581, 652, 716
Hpy8I	GTNNAC	1 cut(s)	748
Hpy99I	CGWCG	2 cut(s)	187, 364
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	3 cut(s)	391, 526, 532
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 219, 523, 641
HpySE526I	ACGT	1 cut(s)	397
Hsp92I	GRCGYC	2 cut(s)	397, 425
Hsp92II	CATG	4 cut(s)	19, 32, 213, 719
Kzo9I	GATC	3 cut(s)	7, 317, 406
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	3 cut(s)	109, 112, 526
LweI	GCATC	3 cut(s)	173, 513, 519
MabI	ACCWGGT	1 cut(s)	193
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	3 cut(s)	9, 319, 408
MboI	GATC	3 cut(s)	7, 317, 406
MboII	GAAGA	3 cut(s)	171, 208, 605
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	345
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	3 cut(s)	470, 689, 695
MseI	TTAA	1 cut(s)	500
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	195, 338
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	2 cut(s)	195, 338
MvnI	CGCG	2 cut(s)	175, 201
MwoI	GCNNNNNNNGC	4 cut(s)	11, 219, 523, 641
NdeII	GATC	3 cut(s)	7, 317, 406
NlaIII	CATG	4 cut(s)	19, 32, 213, 719
NlaIV	GGNNCC	1 cut(s)	342
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	105
PagI	TCATGA	1 cut(s)	715
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	577, 719
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	7 cut(s)	99, 102, 257, 289, 424, 516, 634
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	193, 336
PspGI	CCWGG	2 cut(s)	193, 336
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	119, 748
PstI	CTGCAG	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	6 cut(s)	20, 26, 590, 596, 688, 694
RsaNI	GTAC	6 cut(s)	19, 25, 589, 595, 687, 693
SaqAI	TTAA	1 cut(s)	500
SatI	GCNGC	7 cut(s)	98, 101, 256, 288, 423, 515, 633
Sau3AI	GATC	3 cut(s)	7, 317, 406
Sau96I	GGNCC	2 cut(s)	119, 748
ScaI	AGTACT	2 cut(s)	596, 694
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	2 cut(s)	195, 338
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	9 cut(s)	72, 196, 242, 250, 310, 400, 539, 575, 753
SexAI	ACCWGGT	1 cut(s)	193
SfaNI	GCATC	3 cut(s)	173, 513, 519
SfcI	CTRYAG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	748
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SsiI	CCGC	6 cut(s)	255, 288, 356, 422, 632, 760
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	193, 336
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	2 cut(s)	557, 653
TatI	WGTACW	2 cut(s)	594, 692
TauI	GCSGC	4 cut(s)	258, 290, 425, 635
TfiI	GAWTC	2 cut(s)	577, 719
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	105
TseI	GCWGC	3 cut(s)	97, 100, 514
Tsp45I	GTSAC	1 cut(s)	105
TspDTI	ATGAA	2 cut(s)	356, 637
TspRI	CASTG	1 cut(s)	499
Van91I	CCANNNNNTGG	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XspI	CTAG	1 cut(s)	116
ZraI	GACGTC	1 cut(s)	398
ZrmI	AGTACT	2 cut(s)	596, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.