Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016959

Physical Location & Seq

Genomic Coordinates Forward (+)

441597 .. 443541

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41547

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCTGAAATTGTTCTTTGAAACTGTTCAGAATGCTCAACAAGCTTGCCACTGGTTGGGATACACCTACCCGTATATTCGCATGTCAAGGAATCCTATGCTCTATATGTTTTGGCCTTTGGAAGCTAATGTTCTCACCACAGATTTTACACTGGAGGAGAGGCGAGCTGATTTTATCCATTCTGCTGCAACCATCTTAGAGAAGAACAATTTGATCAAGTATGACAGAAAAAGTGGATATTTCCAGGTCACAGACTTGGGTCGTATTGCTAGCCATTACTACATAACTCATGGGACAATATCGACATATAATGAGCATTTGAAGCCAACTGTGGGGGATATTGAACTTTATCAATTGTTCTCCTTCAGTGAAGAGTTCAAGTATGTCACTGTGCGGCCGGATGAAAATATGGAACTAGTAAAACTATCGGAATGTGTTCCCATTCCGGTCAAGGAGAGCCTGAAAGATCCCAGTTGCAAGATTAATGTTTTGCTGCAAGCATATATTGCAGAGCTGAAATTTGAAGGGTTTTCATTGACACAAGATATGGTTTACATTACACAGAGTGCTGGGCGTCTTGTACGAGCTCTTTTCGAGATCGTTTTGAAACGAGGCTGGGCTCAACTTGCAGACAAGGCTTTGAACTTGTGTAAAATGGTTAGCAAGAGGATGTGGAGTGTCCAAATACTTCTTCGCCAATTCCATGGAATAACAAAAGATGTCTTGGTGAAGTTGCAGAAGAATAATTTCACTCCCCATTTACAAATTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

257

Amino Acids

30.01

Weight (kDa)

8.74

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_SNRNP200	PF23445	7 - 68	7.6e-12	Winged Helix-turn-helix domain
Sec63	PF02889	84 - 256	6.2e-58	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016959)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g21220 pycom12g23610
rosa_chinensis	RchiOBHm_Chr3g0448021
rosa_multiflora	Rmu_sc0005582.1_g000010 Rmu_sc0005969.1_g000017
rosa_rugosa	Rorug02G0607800
rosa_samantha	Rh3AG006900 Rh3AG007000 Rh3BG006600 Rh3BG006700 Rh3CG006800 Rh3CG006900 Rh3DG007200 Rh3DG007300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	55
AciI	CCGC	1 cut(s)	394
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	395
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	349
AcyI	GRCGYC	1 cut(s)	574
AdeI	CACNNNGTG	1 cut(s)	566
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	2 cut(s)	55, 332
AgsI	TTSAA	7 cut(s)	20, 322, 344, 379, 524, 607, 643
AhlI	ACTAGT	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	675, 707
AluBI	AGCT	5 cut(s)	44, 125, 167, 514, 587
AluI	AGCT	5 cut(s)	44, 125, 167, 514, 587
Alw21I	GWGCWC	1 cut(s)	589
AlwI	GGATC	1 cut(s)	461
AoxI	GGCC	2 cut(s)	113, 395
ApeKI	GCWGC	2 cut(s)	185, 493
ApoI	RAATTY	1 cut(s)	518
AseI	ATTAAT	1 cut(s)	483
Asp700I	GAANNNNTTC	4 cut(s)	11, 24, 435, 746
AsuHPI	GGTGA	2 cut(s)	127, 739
AsuNHI	GCTAGC	1 cut(s)	269
BanII	GRGCYC	2 cut(s)	589, 622
Bbv12I	GWGCWC	1 cut(s)	589
BbvI	GCAGC	2 cut(s)	172, 480
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	245
BciVI	GTATCC	1 cut(s)	53
BclI	TGATCA	1 cut(s)	213
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	2 cut(s)	270, 416
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	3 cut(s)	186, 395, 494
BlsI	GCNGC	3 cut(s)	187, 396, 495
Bme1390I	CCNGG	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	465
BmtI	GCTAGC	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	465
BoxI	GACNNNNGTC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	574
BsaJI	CCNNGG	1 cut(s)	703
BsaWI	WCCGGW	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 332
Bse1I	ACTGG	3 cut(s)	56, 156, 471
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	703
BseGI	GGATG	2 cut(s)	406, 675
BseLI	CCNNNNNNNGG	2 cut(s)	55, 332
BseNI	ACTGG	3 cut(s)	56, 156, 471
BseRI	GAGGAG	1 cut(s)	170
BseX3I	CGGCCG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	172, 480
BseYI	CCCAGC	2 cut(s)	569, 615
Bsh1285I	CGRYCG	1 cut(s)	398
BshFI	GGCC	2 cut(s)	115, 397
BsiEI	CGRYCG	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	2 cut(s)	398, 446
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	55, 332
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	115, 397
Bsp1286I	GDGCHC	2 cut(s)	589, 622
Bsp143I	GATC	3 cut(s)	213, 466, 597
Bsp19I	CCATGG	1 cut(s)	703
BspACI	CCGC	1 cut(s)	394
BspANI	GGCC	2 cut(s)	115, 397
BspOI	GCTAGC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	461
BsrI	ACTGG	3 cut(s)	56, 156, 471
BssECI	CCNNGG	1 cut(s)	703
BssMI	GATC	3 cut(s)	213, 466, 597
BssNI	GRCGYC	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	703
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	3 cut(s)	25, 331, 391
Bst6I	CTCTTC	1 cut(s)	366
BstACI	GRCGYC	1 cut(s)	574
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	4 cut(s)	46, 165, 271, 498
BstDEI	CTNAG	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	703
BstF5I	GGATG	2 cut(s)	406, 675
BstKTI	GATC	3 cut(s)	216, 469, 600
BstMBI	GATC	3 cut(s)	213, 466, 597
BstMCI	CGRYCG	1 cut(s)	398
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 322, 506, 626, 635
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	85
BstPAI	GACNNNNGTC	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	172, 480
BstX2I	RGATCY	1 cut(s)	466
BstXI	CCANNNNNNTGG	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	466
BstZI	CGGCCG	1 cut(s)	395
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	115, 397
BtgI	CCRYGG	1 cut(s)	703
BtsCI	GGATG	2 cut(s)	406, 675
BtsIMutI	CAGTG	4 cut(s)	49, 149, 373, 387
Cac8I	GCNNGC	4 cut(s)	46, 165, 271, 498
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	1 cut(s)	581
CviAII	CATG	3 cut(s)	82, 290, 704
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	3 cut(s)	215, 468, 599
DpnII	GATC	3 cut(s)	213, 466, 597
DraIII	CACNNNGTG	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	395
EagI	CGGCCG	1 cut(s)	395
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Ecl136II	GAGCTC	1 cut(s)	587
EclXI	CGGCCG	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	703
Eco24I	GRGCYC	2 cut(s)	589, 622
Eco52I	CGGCCG	1 cut(s)	395
Eco53kI	GAGCTC	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	703
EcoT38I	GRGCYC	2 cut(s)	589, 622
ErhI	CCWWGG	1 cut(s)	703
FaeI	CATG	3 cut(s)	85, 293, 707
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	3 cut(s)	81, 289, 703
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	186, 395, 494
FokI	GGATG	2 cut(s)	413, 682
FriOI	GRGCYC	2 cut(s)	589, 622
Fsp4HI	GCNGC	3 cut(s)	186, 395, 494
FspBI	CTAG	2 cut(s)	270, 416
GluI	GCNGC	3 cut(s)	186, 395, 494
GsaI	CCCAGC	2 cut(s)	573, 619
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	115, 397
HapII	CCGG	2 cut(s)	398, 446
HgaI	GACGC	1 cut(s)	563
Hin1I	GRCGYC	1 cut(s)	574
Hin1II	CATG	3 cut(s)	85, 293, 707
HindIII	AAGCTT	1 cut(s)	42
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	398, 446
HphI	GGTGA	2 cut(s)	127, 739
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	2 cut(s)	30, 430
Hpy188III	TCNNGA	1 cut(s)	595
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	2 cut(s)	373, 518
HpyCH4III	ACNGT	3 cut(s)	25, 331, 391
HpyCH4V	TGCA	6 cut(s)	188, 477, 496, 509, 629, 736
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 322, 506, 626, 635
HpyF3I	CTNAG	1 cut(s)	196
Hsp92I	GRCGYC	1 cut(s)	574
Hsp92II	CATG	3 cut(s)	85, 293, 707
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	213, 466, 597
Lsp1109I	GCAGC	2 cut(s)	172, 480
MaeI	CTAG	2 cut(s)	270, 416
MaeIII	GTNAC	2 cut(s)	247, 385
MalI	GATC	3 cut(s)	215, 468, 599
MboI	GATC	3 cut(s)	213, 466, 597
MboII	GAAGA	4 cut(s)	214, 383, 683, 751
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	2 cut(s)	589, 622
MluCI	AATT	7 cut(s)	8, 208, 353, 518, 698, 745, 765
MnlI	CCTC	4 cut(s)	148, 153, 605, 660
MroXI	GAANNNNTTC	4 cut(s)	11, 24, 435, 746
MseI	TTAA	1 cut(s)	483
MspI	CCGG	2 cut(s)	398, 446
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	353
Mva1269I	GAATGC	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	5 cut(s)	41, 322, 506, 626, 635
NcoI	CCATGG	1 cut(s)	703
NdeII	GATC	3 cut(s)	213, 466, 597
NheI	GCTAGC	1 cut(s)	269
NlaIII	CATG	3 cut(s)	85, 293, 707
NmuCI	GTSAC	2 cut(s)	247, 385
NspI	RCATGY	1 cut(s)	85
PctI	GAATGC	1 cut(s)	37
PdmI	GAANNNNTTC	4 cut(s)	11, 24, 435, 746
PfeI	GAWTC	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	187, 396, 495
PshAI	GACNNNNGTC	1 cut(s)	258
PshBI	ATTAAT	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	2 cut(s)	569, 615
PspGI	CCWGG	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
SacI	GAGCTC	1 cut(s)	589
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	3 cut(s)	186, 395, 494
Sau3AI	GATC	3 cut(s)	213, 466, 597
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	2 cut(s)	589, 622
SetI	ASST	7 cut(s)	46, 68, 127, 169, 249, 516, 589
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	7 cut(s)	8, 208, 353, 518, 698, 745, 765
SsiI	CCGC	1 cut(s)	394
SspMI	CTAG	2 cut(s)	270, 416
SstI	GAGCTC	1 cut(s)	589
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	703
TaaI	ACNGT	3 cut(s)	25, 331, 391
TaqI	TCGA	2 cut(s)	302, 594
TasI	AATT	7 cut(s)	8, 208, 353, 518, 698, 745, 765
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	4 cut(s)	56, 156, 373, 394
TseFI	GTSAC	2 cut(s)	247, 385
TseI	GCWGC	2 cut(s)	185, 493
Tsp45I	GTSAC	2 cut(s)	247, 385
TspDTI	ATGAA	2 cut(s)	417, 522
TspRI	CASTG	4 cut(s)	56, 156, 373, 394
Van91I	CCANNNNNTGG	1 cut(s)	55
VspI	ATTAAT	1 cut(s)	483
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	1 cut(s)	85
XmnI	GAANNNNTTC	4 cut(s)	11, 24, 435, 746
XspI	CTAG	2 cut(s)	270, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.