Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005582.1

Orthogroup ID

OG0016959

Physical Location & Seq

Genomic Coordinates Reverse (-)

54006 .. 55073

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005582.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgccaaagatgggaagaacacttcataaggtcatccaccagttccccaaattaaaccttgcagcgcatgtgcagccaattactcgaactgtactgagggttgagcttactataacgcctgactttcaatgggaggaaaaagttcatggctatatggagccgttttgggtacttgtggaggataatgatggggaaaatattcttcatcatgaatattttttgctgaagaagcagtatattgatgaggatcatactttgaacttcactgttcaaatttatgaaccccttccgcctcactacttcattcgtgttgtatctgataggtggcttgggtcacagactgttttacctgtttctttcagatacctcatcttacctgaaaagtatcctccaccaacagagttattggacctgcaaccacttcctgtgacagcattaaggaatccgttatatgaagctctgtatcaagatttcaaacagtttaatcctgtccagactcaggtcttcactgttttgtataattctgatgacaatgtcttggttgctgcaccaacagggagtgggaagaccatatgcgcagagtttgctgtattgaggaatcatcaaaaggcctctgaaagtggcatgcgcgctgtttatattgcccctgttgaaggtcttgccaaggaacggcacactgattggcaaaagaagtttggaatgggaccaaacggtcttaatctttgtgttgttgaattaacaggggaaagagccacagatttaaagctactcgaaaaaggtcagattatcatcagcactccagagaaatgggatgctttatcttgcgggtggaaacagaggaagcatgttcagcaagttagtctttttattatagatgaactacacttgattggtggtcagggtggttccacattggaggtaatagtctctaggatgagacgcatggcaagtgaacttgagaacaagattcgtattgtagcgctgtcaagttcacttgcaaatgccaaggatcttggaggatggatgttcctacgaggaaacatgtccaacaaacagcacaggatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

355

Amino Acids

40.63

Weight (kDa)

7.23

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016959)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g21220 pycom12g23610
rosa_chinensis	RchiOBHm_Chr3g0448021
rosa_multiflora	Rmu_sc0005582.1_g000010 Rmu_sc0005969.1_g000017
rosa_rugosa	Rorug02G0607800
rosa_samantha	Rh3AG006900 Rh3AG007000 Rh3BG006600 Rh3BG006700 Rh3CG006800 Rh3CG006900 Rh3DG007200 Rh3DG007300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	711
Acc16I	TGCGCA	1 cut(s)	577
Acc36I	ACCTGC	1 cut(s)	420
AccII	CGCG	1 cut(s)	630
AciI	CCGC	2 cut(s)	290, 825
AclWI	GGATC	2 cut(s)	255, 1017
AcsI	RAATTY	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	2 cut(s)	93, 171
AfeI	AGCGCT	1 cut(s)	981
AfiI	CCNNNNNNNGG	4 cut(s)	11, 499, 653, 669
AflIII	ACRYGT	1 cut(s)	1041
AgsI	TTSAA	6 cut(s)	128, 259, 272, 475, 653, 734
AluBI	AGCT	3 cut(s)	106, 458, 766
AluI	AGCT	3 cut(s)	106, 458, 766
Alw26I	GTCTC	2 cut(s)	931, 931
AlwI	GGATC	2 cut(s)	255, 1017
Aor51HI	AGCGCT	1 cut(s)	981
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	3 cut(s)	62, 73, 545
ApoI	RAATTY	1 cut(s)	273
Asp700I	GAANNNNTTC	3 cut(s)	141, 198, 285
AspLEI	GCGC	5 cut(s)	67, 578, 630, 632, 982
AspS9I	GGNCC	2 cut(s)	409, 704
AvaII	GGWCC	2 cut(s)	409, 704
BbsI	GAAGAC	2 cut(s)	496, 572
BbvI	GCAGC	3 cut(s)	74, 85, 532
BccI	CCATC	3 cut(s)	4, 182, 1014
BceAI	ACGGC	2 cut(s)	145, 686
BciVI	GTATCC	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	931, 931
BfaI	CTAG	1 cut(s)	930
BfoI	RGCGCY	1 cut(s)	983
BfuAI	ACCTGC	1 cut(s)	420
BfuI	GTATCC	1 cut(s)	396
BisI	GCNGC	3 cut(s)	63, 74, 546
BlsI	GCNGC	3 cut(s)	64, 75, 547
Bme18I	GGWCC	2 cut(s)	409, 704
BmgT120I	GGNCC	2 cut(s)	409, 704
BmiI	GGNNCC	3 cut(s)	159, 705, 907
BmsI	GCATC	1 cut(s)	802
BoxI	GACNNNNGTC	1 cut(s)	500
BpiI	GAAGAC	2 cut(s)	496, 572
BpmI	CTGGAG	1 cut(s)	783
BpuEI	CTTGAG	1 cut(s)	977
BsaBI	GATNNNNATC	2 cut(s)	246, 788
BsaJI	CCNNGG	2 cut(s)	663, 1005
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 499, 653, 669
Bse1I	ACTGG	1 cut(s)	40
Bse8I	GATNNNNATC	2 cut(s)	246, 788
BseDI	CCNNGG	2 cut(s)	663, 1005
BseGI	GGATG	5 cut(s)	33, 817, 939, 1025, 1029
BseJI	GATNNNNATC	2 cut(s)	246, 788
BseLI	CCNNNNNNNGG	4 cut(s)	11, 499, 653, 669
BseMII	CTCAG	2 cut(s)	86, 512
BseNI	ACTGG	1 cut(s)	40
BsePI	GCGCGC	1 cut(s)	628
BseXI	GCAGC	3 cut(s)	74, 85, 532
BsgI	GTGCAG	2 cut(s)	92, 531
Bsh1236I	CGCG	1 cut(s)	630
BshFI	GGCC	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	4 cut(s)	11, 499, 653, 669
BsmAI	GTCTC	2 cut(s)	931, 931
BsmBI	CGTCTC	1 cut(s)	931
BsmFI	GGGAC	1 cut(s)	717
BsnI	GGCC	1 cut(s)	611
Bsp143I	GATC	3 cut(s)	247, 1009, 1062
BspACI	CCGC	2 cut(s)	290, 825
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	2 cut(s)	87, 511
BspFNI	CGCG	1 cut(s)	630
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	159, 705, 907
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	2 cut(s)	255, 1017
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	663, 1005
BssHII	GCGCGC	1 cut(s)	628
BssMI	GATC	3 cut(s)	247, 1009, 1062
BssT1I	CCWWGG	2 cut(s)	663, 1005
Bst4CI	ACNGT	6 cut(s)	91, 268, 343, 480, 511, 713
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	626, 630
BstDEI	CTNAG	2 cut(s)	95, 498
BstENI	CCTNNNNNAGG	1 cut(s)	651
BstF5I	GGATG	5 cut(s)	33, 817, 939, 1025, 1029
BstFNI	CGCG	1 cut(s)	630
BstH2I	RGCGCY	1 cut(s)	983
BstHHI	GCGC	5 cut(s)	67, 578, 630, 632, 982
BstKTI	GATC	3 cut(s)	250, 1012, 1065
BstMAI	GTCTC	2 cut(s)	931, 931
BstMBI	GATC	3 cut(s)	247, 1009, 1062
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 229, 584, 850
BstNSI	RCATGY	4 cut(s)	71, 628, 848, 1045
BstPAI	GACNNNNGTC	1 cut(s)	500
BstUI	CGCG	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	74, 85, 532
BstV2I	GAAGAC	2 cut(s)	496, 572
BstX2I	RGATCY	2 cut(s)	1009, 1062
BstXI	CCANNNNNNTGG	1 cut(s)	807
BstYI	RGATCY	2 cut(s)	1009, 1062
BsuI	GTATCC	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	611
BtsCI	GGATG	5 cut(s)	33, 817, 939, 1025, 1029
BtsIMutI	CAGTG	3 cut(s)	264, 507, 675
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	2 cut(s)	626, 630
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	5 cut(s)	67, 578, 630, 632, 982
Cfr13I	GGNCC	2 cut(s)	409, 704
CseI	GACGC	1 cut(s)	948
Csp6I	GTAC	2 cut(s)	92, 170
CviAII	CATG	7 cut(s)	68, 146, 209, 625, 845, 943, 1042
CviJI	RGCY	9 cut(s)	76, 106, 150, 160, 328, 458, 611, 752, 766
CviKI_1	RGCY	9 cut(s)	76, 106, 150, 160, 328, 458, 611, 752, 766
CviQI	GTAC	2 cut(s)	92, 170
DdeI	CTNAG	2 cut(s)	95, 498
DpnI	GATC	3 cut(s)	249, 1011, 1064
DpnII	GATC	3 cut(s)	247, 1009, 1062
DraI	TTTAAA	1 cut(s)	762
DrdI	GACNNNNNNGTC	1 cut(s)	711
DseDI	GACNNNNNNGTC	1 cut(s)	711
EciI	GGCGGA	1 cut(s)	279
Eco130I	CCWWGG	2 cut(s)	663, 1005
Eco147I	AGGCCT	1 cut(s)	611
Eco47I	GGWCC	2 cut(s)	409, 704
Eco47III	AGCGCT	1 cut(s)	981
Eco57I	CTGAAG	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	651
EcoT14I	CCWWGG	2 cut(s)	663, 1005
ErhI	CCWWGG	2 cut(s)	663, 1005
Esp3I	CGTCTC	1 cut(s)	931
FaeI	CATG	7 cut(s)	71, 149, 212, 628, 848, 946, 1045
FalI	AAGNNNNNCTT	2 cut(s)	846, 878
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	7 cut(s)	67, 145, 208, 624, 844, 942, 1041
FauI	CCCGC	1 cut(s)	818
FauNDI	CATATG	1 cut(s)	572
Fnu4HI	GCNGC	3 cut(s)	63, 74, 546
FokI	GGATG	5 cut(s)	20, 824, 946, 1032, 1036
Fsp4HI	GCNGC	3 cut(s)	63, 74, 546
FspBI	CTAG	1 cut(s)	930
FspI	TGCGCA	1 cut(s)	577
GlaI	GCGC	5 cut(s)	66, 577, 629, 631, 981
GluI	GCNGC	3 cut(s)	63, 74, 546
GsuI	CTGGAG	1 cut(s)	783
HaeII	RGCGCY	1 cut(s)	983
HaeIII	GGCC	1 cut(s)	611
HgaI	GACGC	1 cut(s)	948
HhaI	GCGC	5 cut(s)	67, 578, 630, 632, 982
Hin1II	CATG	7 cut(s)	71, 149, 212, 628, 848, 946, 1045
Hin6I	GCGC	5 cut(s)	65, 576, 628, 630, 980
HinP1I	GCGC	5 cut(s)	65, 576, 628, 630, 980
HinfI	GANTC	4 cut(s)	442, 496, 598, 967
Hpy166II	GTNNAC	2 cut(s)	953, 992
Hpy188I	TCNGA	5 cut(s)	319, 362, 526, 616, 783
Hpy188III	TCNNGA	4 cut(s)	209, 467, 493, 800
Hpy8I	GTNNAC	2 cut(s)	953, 992
HpyAV	CCTTC	2 cut(s)	296, 647
HpyCH4III	ACNGT	6 cut(s)	91, 268, 343, 480, 511, 713
HpyCH4V	TGCA	5 cut(s)	62, 73, 415, 548, 998
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 229, 584, 850
HpyF3I	CTNAG	2 cut(s)	95, 498
Hsp92II	CATG	7 cut(s)	71, 149, 212, 628, 848, 946, 1045
HspAI	GCGC	5 cut(s)	65, 576, 628, 630, 980
Kzo9I	GATC	3 cut(s)	247, 1009, 1062
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	3 cut(s)	74, 85, 532
LweI	GCATC	1 cut(s)	802
MaeI	CTAG	1 cut(s)	930
MaeIII	GTNAC	2 cut(s)	333, 427
MalI	GATC	3 cut(s)	249, 1011, 1064
MboI	GATC	3 cut(s)	247, 1009, 1062
MboII	GAAGA	5 cut(s)	27, 194, 238, 496, 577
MflI	RGATCY	2 cut(s)	1009, 1062
MluCI	AATT	5 cut(s)	50, 78, 273, 520, 734
MlyI	GAGTC	1 cut(s)	490
MroXI	GAANNNNTTC	3 cut(s)	141, 198, 285
MseI	TTAA	6 cut(s)	53, 437, 483, 717, 737, 761
MvnI	CGCG	1 cut(s)	630
MwoI	GCNNNNNNNGC	4 cut(s)	73, 229, 584, 850
NdeI	CATATG	1 cut(s)	572
NdeII	GATC	3 cut(s)	247, 1009, 1062
NlaIII	CATG	7 cut(s)	71, 149, 212, 628, 848, 946, 1045
NlaIV	GGNNCC	3 cut(s)	159, 705, 907
NmuCI	GTSAC	2 cut(s)	333, 427
NsbI	TGCGCA	1 cut(s)	577
NspI	RCATGY	4 cut(s)	71, 628, 848, 1045
PaeI	GCATGC	1 cut(s)	628
PagI	TCATGA	1 cut(s)	208
PauI	GCGCGC	1 cut(s)	628
PceI	AGGCCT	1 cut(s)	611
PciI	ACATGT	1 cut(s)	1041
PdmI	GAANNNNTTC	3 cut(s)	141, 198, 285
PfeI	GAWTC	3 cut(s)	442, 598, 967
PflFI	GACNNNGTC	1 cut(s)	533
PkrI	GCNGC	3 cut(s)	64, 75, 547
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PscI	ACATGT	1 cut(s)	1041
PshAI	GACNNNNGTC	1 cut(s)	500
PspN4I	GGNNCC	3 cut(s)	159, 705, 907
PspPI	GGNCC	2 cut(s)	409, 704
PsuI	RGATCY	2 cut(s)	1009, 1062
PsyI	GACNNNGTC	1 cut(s)	533
PteI	GCGCGC	1 cut(s)	628
RsaI	GTAC	2 cut(s)	93, 171
RsaNI	GTAC	2 cut(s)	92, 170
SaqAI	TTAA	6 cut(s)	53, 437, 483, 717, 737, 761
SatI	GCNGC	3 cut(s)	63, 74, 546
Sau3AI	GATC	3 cut(s)	247, 1009, 1062
Sau96I	GGNCC	2 cut(s)	409, 704
SchI	GAGTC	1 cut(s)	490
SfaNI	GCATC	1 cut(s)	802
SinI	GGWCC	2 cut(s)	409, 704
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
SphI	GCATGC	1 cut(s)	628
Sse9I	AATT	5 cut(s)	50, 78, 273, 520, 734
SseBI	AGGCCT	1 cut(s)	611
SsiI	CCGC	2 cut(s)	290, 825
SspI	AATATT	2 cut(s)	199, 215
SspMI	CTAG	1 cut(s)	930
StuI	AGGCCT	1 cut(s)	611
StyI	CCWWGG	2 cut(s)	663, 1005
TaaI	ACNGT	6 cut(s)	91, 268, 343, 480, 511, 713
TaqI	TCGA	2 cut(s)	85, 771
TasI	AATT	5 cut(s)	50, 78, 273, 520, 734
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	3 cut(s)	442, 598, 967
Tru1I	TTAA	6 cut(s)	53, 437, 483, 717, 737, 761
Tru9I	TTAA	6 cut(s)	53, 437, 483, 717, 737, 761
TscAI	CASTG	3 cut(s)	271, 514, 682
TseFI	GTSAC	2 cut(s)	333, 427
TseI	GCWGC	3 cut(s)	62, 73, 545
Tsp45I	GTSAC	2 cut(s)	333, 427
TspDTI	ATGAA	8 cut(s)	14, 134, 194, 225, 292, 294, 468, 891
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	3 cut(s)	271, 514, 682
Tth111I	GACNNNGTC	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	409, 704
XagI	CCTNNNNNAGG	1 cut(s)	651
XapI	RAATTY	1 cut(s)	273
XceI	RCATGY	4 cut(s)	71, 628, 848, 1045
XmnI	GAANNNNTTC	3 cut(s)	141, 198, 285
XspI	CTAG	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.