RchiOBHm_Chr3g0451041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0021374
Physical Location & Seq
Reverse (-)
2300020 .. 2300716
697 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41834

Sequence Viewer

Length: 267 bp
ATGGAAAAGGCAGCAGGGTCGGCGGCGGAGGCGCTGGGCAGATCGTTGCAGTTGGAGGCGCGGGCTGTGGGGCTTCGTGGCCGGGAGGATGAGAAATTGGGAGTTTGTGCAGGTGCACAGGCGGTGCTAGCTTCGGGTTTTGATGGAGCGGAATGGGATGGAAATTTGATATTCGGTATACGATATTCGGAATTCGGGATTCAAGGAGAATTTTCGTATGATTTAGGATCGAATTGCTCTGATACCATGTCAGAACTTTGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.24

Weight (kDa)

4.33

Isoelectric Point (pI)

23.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021374)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0451041
rosa_multiflora Rmu_sc0006326.1_g000023
rosa_roxburghii Rroxscaffold_4G00301010 Rroxscaffold_4G00301170
rosa_rugosa Rorug01G0119500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 101
AccBSI CCGCTC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 178
AccII CGCG 1 cut(s) 61
AciI CCGC 5 cut(s) 23, 26, 61, 122, 149
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 3 cut(s) 163, 191, 209
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 118
Alw44I GTGCAC 1 cut(s) 114
AlwI GGATC 1 cut(s) 235
AoxI GGCC 1 cut(s) 79
ApaLI GTGCAC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 3 cut(s) 163, 191, 209
AspLEI GCGC 2 cut(s) 34, 61
AsuC2I CCSGG 1 cut(s) 83
AsuNHI GCTAGC 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 23
BccI CCATC 2 cut(s) 137, 152
BcgI CGANNNNNNTGC 1 cut(s) 34
BcnI CCSGG 1 cut(s) 83
BfaI CTAG 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 101
BisI GCNGC 2 cut(s) 12, 24
BlsI GCNGC 2 cut(s) 13, 25
Bme1390I CCNGG 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 83
BmtI GCTAGC 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 83
BseGI GGATG 2 cut(s) 94, 163
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 82
BsnI GGCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 2 cut(s) 41, 227
BspACI CCGC 5 cut(s) 23, 26, 61, 122, 149
BspANI GGCC 1 cut(s) 81
BspFNI CGCG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 101
BspOI GCTAGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 149
BssMI GATC 2 cut(s) 41, 227
BssNAI GTATAC 1 cut(s) 179
Bst1107I GTATAC 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 63, 129
BstF5I GGATG 2 cut(s) 94, 163
BstFNI CGCG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 2 cut(s) 34, 61
BstKTI GATC 2 cut(s) 44, 230
BstMBI GATC 2 cut(s) 41, 227
BstMWI GCNNNNNNNGC 3 cut(s) 20, 29, 128
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 118
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 23
BstZ17I GTATAC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 2 cut(s) 94, 163
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 63, 129
CfoI GCGC 2 cut(s) 34, 61
CviAII CATG 1 cut(s) 247
CviJI RGCY 4 cut(s) 65, 73, 81, 131
CviKI_1 RGCY 4 cut(s) 65, 73, 81, 131
DpnI GATC 2 cut(s) 43, 229
DpnII GATC 2 cut(s) 41, 227
EaeI YGGCCR 1 cut(s) 79
EciI GGCGGA 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 191
FaeI CATG 1 cut(s) 250
FaiI YATR 3 cut(s) 179, 219, 248
FatI CATG 1 cut(s) 246
FauI CCCGC 1 cut(s) 54
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 12, 24
FokI GGATG 2 cut(s) 101, 170
Fsp4HI GCNGC 2 cut(s) 12, 24
FspBI CTAG 1 cut(s) 128
GlaI GCGC 2 cut(s) 33, 60
GluI GCNGC 2 cut(s) 12, 24
GsaI CCCAGC 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 82
HhaI GCGC 2 cut(s) 34, 61
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 2 cut(s) 32, 59
HinP1I GCGC 2 cut(s) 32, 59
HinfI GANTC 1 cut(s) 199
HpaII CCGG 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 116, 179
Hpy188I TCNGA 3 cut(s) 190, 241, 253
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 2 cut(s) 116, 179
HpyCH4V TGCA 3 cut(s) 49, 110, 116
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 29, 128
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 2 cut(s) 32, 59
Kzo9I GATC 2 cut(s) 41, 227
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 20, 95, 96, 104
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 260
MalI GATC 2 cut(s) 43, 229
MbiI CCGCTC 1 cut(s) 149
MboI GATC 2 cut(s) 41, 227
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 5 cut(s) 95, 163, 191, 209, 232
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 3 cut(s) 22, 49, 79
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 3 cut(s) 20, 29, 128
NciI CCSGG 1 cut(s) 83
NdeII GATC 2 cut(s) 41, 227
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 1 cut(s) 250
PaqCI CACCTGC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 13, 25
PspFI CCCAGC 1 cut(s) 34
SatI GCNGC 2 cut(s) 12, 24
Sau3AI GATC 2 cut(s) 41, 227
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 118
SetI ASST 2 cut(s) 115, 133
Sse9I AATT 5 cut(s) 95, 163, 191, 209, 232
SsiI CCGC 5 cut(s) 23, 26, 61, 122, 149
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 81
TaqI TCGA 1 cut(s) 230
TasI AATT 5 cut(s) 95, 163, 191, 209, 232
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 1 cut(s) 199
TseI GCWGC 1 cut(s) 11
VneI GTGCAC 1 cut(s) 114
XapI RAATTY 3 cut(s) 163, 191, 209
XmiI GTMKAC 1 cut(s) 178
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.