Rroxscaffold_4G00301010

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0021374
Physical Location & Seq
Reverse (-)
21371507 .. 21384970
13464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301010.1

Sequence Viewer

Length: 675 bp
ATGGAGATAAGCTATGCTCCCAAAGCCCCTACATCATCCAGCTGCAACACGCACTTCGCTTCAGCAAAAACGAAATCGAAGCCCGGATCCAATGATGAAGGCCCCAACCCCATATCCACTAAAAGGATCCGGACCCGAGACATTCAAGCTGCGCCACCACCAGCACCACCGACGTCCACGCATCCTGCAAGTCCACGATCATCATACTTTCTCATCGTTCCTTTCCCCTTGTCGCCGTTGGGGATACCTCGCGCCAACACCGACCAGCAAGCCCAACAAGTTGTACTCCTCGGTCGCGAGTTATTGAACAATCACTCGCGAAGGAAGATCGCAACCGGATTGCCAAGAAGCGATGATGGCCAATGCCACCCTAGAAAACTTGATGATGAAGCTCGGCAATGTTGTCCAAGCGGAAGGATTAGGGGAAGGAAGCCCCCTTCGGGACAATGTAACCGGGAAGACGACTCGATCGTTGCAAAGCCGGAAAAATGTACCCGACATATACGTGCTCACCATCAACGTCCGGCAACACTAAGGCATACCTCACTCTCAACAGCTTTGAGGCGGGTGGTGACGGGGGTGGACCATCCGAATGTGATGGAAAGTACCACAATGACAACACTCCAGTTGTGGCATTATCTACCGGATGGTACAATGGTGGATCAAGGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

24.61

Weight (kDa)

9.87

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021374)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0451041
rosa_multiflora Rmu_sc0006326.1_g000023
rosa_roxburghii Rroxscaffold_4G00301010 Rroxscaffold_4G00301170
rosa_rugosa Rorug01G0119500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 668
AccII CGCG 3 cut(s) 252, 297, 319
AccIII TCCGGA 1 cut(s) 129
AciI CCGC 2 cut(s) 411, 565
AclWI GGATC 5 cut(s) 81, 94, 121, 134, 669
AcoI YGGCCR 1 cut(s) 358
AcuI CTGAAG 1 cut(s) 45
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 4 cut(s) 285, 493, 607, 652
AfiI CCNNNNNNNGG 2 cut(s) 123, 440
AgsI TTSAA 2 cut(s) 146, 307
AluBI AGCT 5 cut(s) 12, 42, 149, 392, 557
AluI AGCT 5 cut(s) 12, 42, 149, 392, 557
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 5 cut(s) 81, 94, 121, 134, 669
Ama87I CYCGRG 1 cut(s) 135
Aor13HI TCCGGA 1 cut(s) 129
AoxI GGCC 2 cut(s) 100, 358
ApeKI GCWGC 2 cut(s) 42, 149
AspLEI GCGC 2 cut(s) 154, 254
AspS9I GGNCC 3 cut(s) 101, 132, 583
AsuC2I CCSGG 2 cut(s) 84, 455
AsuHPI GGTGA 2 cut(s) 503, 583
AvaI CYCGRG 1 cut(s) 135
AvaII GGWCC 2 cut(s) 132, 583
BaeI ACNNNNGTAYC 2 cut(s) 642, 675
BalI TGGCCA 1 cut(s) 360
BamHI GGATCC 2 cut(s) 86, 126
BanI GGYRCC 1 cut(s) 668
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 511
BbvI GCAGC 2 cut(s) 29, 136
BccI CCATC 5 cut(s) 350, 522, 592, 594, 641
BceAI ACGGC 1 cut(s) 220
BciVI GTATCC 1 cut(s) 237
BcnI CCSGG 2 cut(s) 84, 455
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 372
BfuI GTATCC 1 cut(s) 237
BisI GCNGC 2 cut(s) 43, 150
BlsI GCNGC 2 cut(s) 44, 151
Bme1390I CCNGG 2 cut(s) 84, 455
Bme18I GGWCC 2 cut(s) 132, 583
BmeT110I CYCGRG 1 cut(s) 135
BmgT120I GGNCC 3 cut(s) 101, 132, 583
BmiI GGNNCC 5 cut(s) 88, 103, 128, 134, 670
BmrFI CCNGG 2 cut(s) 84, 455
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 608
BpuMI CCSGG 2 cut(s) 84, 455
BsaAI YACGTR 1 cut(s) 506
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 289
BsaWI WCCGGW 3 cut(s) 129, 335, 643
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 440
Bse1I ACTGG 1 cut(s) 625
Bse3DI GCAATG 1 cut(s) 404
BseAI TCCGGA 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 4 cut(s) 35, 181, 586, 652
BseLI CCNNNNNNNGG 2 cut(s) 123, 440
BseMI GCAATG 1 cut(s) 404
BseNI ACTGG 1 cut(s) 625
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 29, 136
Bsh1236I CGCG 3 cut(s) 252, 297, 319
Bsh1285I CGRYCG 2 cut(s) 295, 471
BshFI GGCC 2 cut(s) 102, 360
BshNI GGYRCC 1 cut(s) 668
BsiEI CGRYCG 2 cut(s) 295, 471
BsiHKAI GWGCWC 1 cut(s) 511
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 7 cut(s) 84, 130, 336, 454, 482, 524, 644
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 2 cut(s) 123, 440
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 2 cut(s) 102, 360
BsoBI CYCGRG 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 511
Bsp13I TCCGGA 1 cut(s) 129
Bsp143I GATC 6 cut(s) 86, 126, 197, 327, 468, 661
Bsp68I TCGCGA 2 cut(s) 297, 319
BspACI CCGC 2 cut(s) 411, 565
BspANI GGCC 2 cut(s) 102, 360
BspEI TCCGGA 1 cut(s) 129
BspFNI CGCG 3 cut(s) 252, 297, 319
BspLI GGNNCC 5 cut(s) 88, 103, 128, 134, 670
BspPI GGATC 5 cut(s) 81, 94, 121, 134, 669
BspT107I GGYRCC 1 cut(s) 668
BsrDI GCAATG 1 cut(s) 404
BsrI ACTGG 1 cut(s) 625
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 6 cut(s) 86, 126, 197, 327, 468, 661
BssNI GRCGYC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 533
BstF5I GGATG 4 cut(s) 35, 181, 586, 652
BstFNI CGCG 3 cut(s) 252, 297, 319
BstHHI GCGC 2 cut(s) 154, 254
BstKTI GATC 6 cut(s) 89, 129, 200, 330, 471, 664
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 6 cut(s) 86, 126, 197, 327, 468, 661
BstMCI CGRYCG 2 cut(s) 295, 471
BstMWI GCNNNNNNNGC 2 cut(s) 23, 357
BstSCI CCNGG 2 cut(s) 82, 453
BstUI CGCG 3 cut(s) 252, 297, 319
BstV1I GCAGC 2 cut(s) 29, 136
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 2 cut(s) 86, 126
BstYI RGATCY 2 cut(s) 86, 126
BsuI GTATCC 1 cut(s) 237
BsuRI GGCC 2 cut(s) 102, 360
BtgZI GCGATG 1 cut(s) 366
BtsCI GGATG 4 cut(s) 35, 181, 586, 652
BtuMI TCGCGA 2 cut(s) 297, 319
Cac8I GCNNGC 1 cut(s) 270
CfoI GCGC 2 cut(s) 154, 254
Cfr13I GGNCC 3 cut(s) 101, 132, 583
Csp6I GTAC 4 cut(s) 284, 492, 606, 651
CviQI GTAC 4 cut(s) 284, 492, 606, 651
DdeI CTNAG 1 cut(s) 533
DpnI GATC 6 cut(s) 88, 128, 199, 329, 470, 663
DpnII GATC 6 cut(s) 86, 126, 197, 327, 468, 661
EaeI YGGCCR 1 cut(s) 358
Eco47I GGWCC 2 cut(s) 132, 583
Eco57I CTGAAG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 101
FaiI YATR 6 cut(s) 15, 113, 205, 501, 503, 540
FaqI GGGAC 1 cut(s) 456
FauI CCCGC 1 cut(s) 558
Fnu4HI GCNGC 2 cut(s) 43, 150
FokI GGATG 4 cut(s) 22, 168, 573, 659
Fsp4HI GCNGC 2 cut(s) 43, 150
FspBI CTAG 1 cut(s) 372
GlaI GCGC 2 cut(s) 153, 253
GluI GCNGC 2 cut(s) 43, 150
GsuI CTGGAG 1 cut(s) 608
HaeIII GGCC 2 cut(s) 102, 360
HapII CCGG 7 cut(s) 84, 130, 336, 454, 482, 524, 644
HhaI GCGC 2 cut(s) 154, 254
Hin1I GRCGYC 1 cut(s) 173
Hin6I GCGC 2 cut(s) 152, 252
HinP1I GCGC 2 cut(s) 152, 252
HinfI GANTC 1 cut(s) 464
HpaII CCGG 7 cut(s) 84, 130, 336, 454, 482, 524, 644
HphI GGTGA 2 cut(s) 503, 583
Hpy166II GTNNAC 3 cut(s) 177, 194, 583
Hpy188I TCNGA 1 cut(s) 591
Hpy188III TCNNGA 4 cut(s) 130, 296, 318, 441
Hpy8I GTNNAC 3 cut(s) 177, 194, 583
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 5 cut(s) 92, 315, 408, 420, 447
HpyCH4IV ACGT 3 cut(s) 173, 505, 520
HpyCH4V TGCA 3 cut(s) 45, 188, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 357
HpyF3I CTNAG 1 cut(s) 533
HpySE526I ACGT 3 cut(s) 173, 505, 520
Hsp92I GRCGYC 1 cut(s) 173
HspAI GCGC 2 cut(s) 152, 252
Kpn2I TCCGGA 1 cut(s) 129
Kzo9I GATC 6 cut(s) 86, 126, 197, 327, 468, 661
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 2 cut(s) 29, 136
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 372
MaeII ACGT 3 cut(s) 173, 505, 520
MaeIII GTNAC 2 cut(s) 449, 571
MalI GATC 6 cut(s) 88, 128, 199, 329, 470, 663
MboI GATC 6 cut(s) 86, 126, 197, 327, 468, 661
MboII GAAGA 2 cut(s) 337, 470
MflI RGATCY 2 cut(s) 86, 126
MhlI GDGCHC 1 cut(s) 511
MlsI TGGCCA 1 cut(s) 360
MluNI TGGCCA 1 cut(s) 360
MlyI GAGTC 1 cut(s) 458
MnlI CCTC 4 cut(s) 258, 299, 553, 555
Mox20I TGGCCA 1 cut(s) 360
MroI TCCGGA 1 cut(s) 129
MscI TGGCCA 1 cut(s) 360
MslI CAYNNNNRTG 2 cut(s) 504, 591
Msp20I TGGCCA 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 7 cut(s) 84, 130, 336, 454, 482, 524, 644
MspR9I CCNGG 2 cut(s) 84, 455
MvnI CGCG 3 cut(s) 252, 297, 319
MwoI GCNNNNNNNGC 2 cut(s) 23, 357
NciI CCSGG 2 cut(s) 84, 455
NdeII GATC 6 cut(s) 86, 126, 197, 327, 468, 661
NlaIV GGNNCC 5 cut(s) 88, 103, 128, 134, 670
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 571
NruI TCGCGA 2 cut(s) 297, 319
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PkrI GCNGC 2 cut(s) 44, 151
Ple19I CGATCG 1 cut(s) 471
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
Ppu21I YACGTR 1 cut(s) 506
PspN4I GGNNCC 5 cut(s) 88, 103, 128, 134, 670
PspPI GGNCC 3 cut(s) 101, 132, 583
PsuI RGATCY 2 cut(s) 86, 126
PvuI CGATCG 1 cut(s) 471
PvuII CAGCTG 1 cut(s) 42
RruI TCGCGA 2 cut(s) 297, 319
RsaI GTAC 4 cut(s) 285, 493, 607, 652
RsaNI GTAC 4 cut(s) 284, 492, 606, 651
RseI CAYNNNNRTG 2 cut(s) 504, 591
SatI GCNGC 2 cut(s) 43, 150
Sau3AI GATC 6 cut(s) 86, 126, 197, 327, 468, 661
Sau96I GGNCC 3 cut(s) 101, 132, 583
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 2 cut(s) 84, 455
SduI GDGCHC 1 cut(s) 511
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 2 cut(s) 132, 583
SmiMI CAYNNNNRTG 2 cut(s) 504, 591
SsiI CCGC 2 cut(s) 411, 565
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 82, 453
TaiI ACGT 3 cut(s) 176, 508, 523
TaqI TCGA 2 cut(s) 77, 467
TaqII GACCGA 1 cut(s) 281
TatI WGTACW 1 cut(s) 283
TseFI GTSAC 1 cut(s) 571
TseI GCWGC 2 cut(s) 42, 149
Tsp45I GTSAC 1 cut(s) 571
TspDTI ATGAA 2 cut(s) 111, 402
VpaK11BI GGWCC 2 cut(s) 132, 583
XspI CTAG 1 cut(s) 372
ZraI GACGTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.