Rmu_sc0006326.1_g000023

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006326.1
OG0021374
Physical Location & Seq
Forward (+)
54162 .. 54539
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006326.1_g000023.1.cds

Sequence Viewer

Length: 378 bp
atggtgacgaaggaggcctatcttaatgtgacagcaagtatcacaatgacaacactccaattgttgcattatccactggatggtacaacggtggatcaaggtgccttaacgtacaacattagaattaatggtaatgggcgtagcatggttgccatggtggtggatgagtgtgactatactgagagatgtgatgcagaccatgattatcagcctccttgtcccaacaacattgttgatgcctccgaggctgtctggaaaaccttaggtgtatatgaggacatacaactggccggggtggcttggatatcacttggtccgacgcctagttacattagagtttctccaagttgcctattttgtttcttctttggggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.81

Weight (kDa)

4.33

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021374)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0451041
rosa_multiflora Rmu_sc0006326.1_g000023
rosa_roxburghii Rroxscaffold_4G00301010 Rroxscaffold_4G00301170
rosa_rugosa Rorug01G0119500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 80
AclWI GGATC 1 cut(s) 102
AcoI YGGCCR 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 320
AfaI GTAC 2 cut(s) 85, 113
AfiI CCNNNNNNNGG 1 cut(s) 80
AlwI GGATC 1 cut(s) 102
AoxI GGCC 2 cut(s) 15, 288
AseI ATTAAT 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 314
AsuC2I CCSGG 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 314
AxyI CCTNAGG 1 cut(s) 262
BaeI ACNNNNGTAYC 2 cut(s) 75, 108
BanI GGYRCC 1 cut(s) 101
BccI CCATC 1 cut(s) 74
BcnI CCSGG 1 cut(s) 292
BfaI CTAG 1 cut(s) 324
BglI GCCNNNNNGGC 2 cut(s) 245, 296
Bme1390I CCNGG 1 cut(s) 292
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 292
BmsI GCATC 2 cut(s) 181, 226
BpuMI CCSGG 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 320
BsaJI CCNNGG 3 cut(s) 153, 243, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 81, 291
Bse21I CCTNAGG 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 153, 243, 291
BseGI GGATG 2 cut(s) 85, 169
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 81, 291
BshFI GGCC 2 cut(s) 17, 290
BshNI GGYRCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 291
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 2 cut(s) 17, 290
Bsp143I GATC 1 cut(s) 94
Bsp19I CCATGG 1 cut(s) 153
BspANI GGCC 2 cut(s) 17, 290
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 101
BsrI ACTGG 2 cut(s) 81, 291
BssECI CCNNGG 3 cut(s) 153, 243, 291
BssMI GATC 1 cut(s) 94
BssNI GRCGYC 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 320
BstDEI CTNAG 2 cut(s) 180, 262
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 85, 169
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 245, 296
BstSCI CCNGG 1 cut(s) 290
BstXI CCANNNNNNTGG 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 262
BsuRI GGCC 2 cut(s) 17, 290
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 85, 169
BtsIMutI CAGTG 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 1 cut(s) 328
Csp6I GTAC 2 cut(s) 84, 112
CviAII CATG 3 cut(s) 145, 154, 200
CviJI RGCY 5 cut(s) 17, 211, 248, 290, 299
CviKI_1 RGCY 5 cut(s) 17, 211, 248, 290, 299
CviQI GTAC 2 cut(s) 84, 112
DdeI CTNAG 2 cut(s) 180, 262
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 153
Eco147I AGGCCT 1 cut(s) 17
Eco32I GATATC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 314
Eco81I CCTNAGG 1 cut(s) 262
EcoRV GATATC 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 148, 157, 203
FaiI YATR 7 cut(s) 146, 155, 177, 201, 271, 273, 281
FaqI GGGAC 1 cut(s) 204
FatI CATG 3 cut(s) 144, 153, 199
FokI GGATG 2 cut(s) 92, 176
FspBI CTAG 1 cut(s) 324
HaeIII GGCC 2 cut(s) 17, 290
HapII CCGG 1 cut(s) 291
HgaI GACGC 1 cut(s) 328
Hin1I GRCGYC 1 cut(s) 320
Hin1II CATG 3 cut(s) 148, 157, 203
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 244, 318
Hpy188III TCNNGA 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 67, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 296
HpyF3I CTNAG 2 cut(s) 180, 262
HpySE526I ACGT 1 cut(s) 110
Hsp92I GRCGYC 1 cut(s) 320
Hsp92II CATG 3 cut(s) 148, 157, 203
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 4 cut(s) 62, 238, 272, 304
LweI GCATC 2 cut(s) 181, 226
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 4 cut(s) 4, 28, 170, 326
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 1 cut(s) 355
MfeI CAATTG 1 cut(s) 59
MluCI AATT 2 cut(s) 59, 123
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 5 cut(s) 7, 222, 238, 250, 268
MseI TTAA 3 cut(s) 24, 107, 126
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 292
MunI CAATTG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 245, 296
NciI CCSGG 1 cut(s) 292
NcoI CCATGG 1 cut(s) 153
NdeII GATC 1 cut(s) 94
NlaIII CATG 3 cut(s) 148, 157, 203
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 3 cut(s) 4, 28, 170
PceI AGGCCT 1 cut(s) 17
PflMI CCANNNNNTGG 1 cut(s) 80
PshBI ATTAAT 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 314
RsaI GTAC 2 cut(s) 85, 113
RsaNI GTAC 2 cut(s) 84, 112
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 3 cut(s) 24, 107, 126
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 292
SetI ASST 4 cut(s) 103, 113, 263, 268
SfaNI GCATC 2 cut(s) 181, 226
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 2 cut(s) 59, 123
SseBI AGGCCT 1 cut(s) 17
SspMI CTAG 1 cut(s) 324
StuI AGGCCT 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 290
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 1 cut(s) 113
TasI AATT 2 cut(s) 59, 123
Tru1I TTAA 3 cut(s) 24, 107, 126
Tru9I TTAA 3 cut(s) 24, 107, 126
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 3 cut(s) 4, 28, 170
Tsp45I GTSAC 3 cut(s) 4, 28, 170
TspRI CASTG 1 cut(s) 81
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 314
VspI ATTAAT 1 cut(s) 126
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.