Rroxscaffold_4G00301170

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0021374
Physical Location & Seq
Reverse (-)
21583698 .. 21586487
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00301170.1

Sequence Viewer

Length: 438 bp
ATGGCGTTATCTAATAGCGCCATCGCCCCGCATTGTGGCGCTACTTGCTATTCAATAGCGCAATTGCTCCTCATCGCGGCCTCAAAGCAATGTCGTCCAAGCGGTAGAATTAGAGGCAAGAAGCCTCCTCCCGGACAATGTAACCGGGAGGATGACTCGACTGTTGCAAAGGAGAAAAATGTACCCAATGTACACGTGCTCACCACCAAGGCCTACCTCACTCTTAACAGCTTTGAAGCGGTGGTGATGGGGGAGGTCCATCCGAATGTGATGGCAAATACCACAATGATAGCACTCCGGCGTTGGGCTGCGCAAGACGTGGGTGTCCGTGTTGCGCGAGCGGCGAGGCAGGCCGCCGGATTCTGCAGCGATTTGTGTTGGGATCTGCTCCGTGGGCTGCGCGGGTTTGGCGGAGAGGTGTGCCGGGCGCATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.56

Weight (kDa)

9.46

Isoelectric Point (pI)

31.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021374)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0451041
rosa_multiflora Rmu_sc0006326.1_g000023
rosa_roxburghii Rroxscaffold_4G00301010 Rroxscaffold_4G00301170
rosa_rugosa Rorug01G0119500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
Acc16I TGCGCA 1 cut(s) 312
AccBSI CCGCTC 1 cut(s) 341
AccII CGCG 3 cut(s) 77, 337, 402
AciI CCGC 8 cut(s) 29, 77, 102, 239, 341, 354, 402, 411
AclWI GGATC 1 cut(s) 390
AcvI CACGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 183, 192
AfiI CCNNNNNNNGG 4 cut(s) 35, 76, 131, 304
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 2 cut(s) 54, 236
AjiI CACGTC 1 cut(s) 319
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw21I GWGCWC 1 cut(s) 201
AlwI GGATC 1 cut(s) 390
AoxI GGCC 3 cut(s) 78, 210, 351
ApeKI GCWGC 3 cut(s) 308, 366, 397
AspLEI GCGC 7 cut(s) 20, 41, 61, 313, 337, 402, 430
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 3 cut(s) 132, 146, 425
AsuHPI GGTGA 2 cut(s) 193, 256
AvaII GGWCC 1 cut(s) 256
BbrPI CACGTG 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 3 cut(s) 295, 378, 384
BccI CCATC 4 cut(s) 29, 241, 265, 267
BcnI CCSGG 3 cut(s) 132, 146, 425
BfmI CTRYAG 1 cut(s) 364
BfoI RGCGCY 2 cut(s) 21, 42
BisI GCNGC 6 cut(s) 78, 309, 342, 354, 367, 398
BlsI GCNGC 6 cut(s) 79, 310, 343, 355, 368, 399
Bme1390I CCNGG 3 cut(s) 132, 146, 425
Bme18I GGWCC 1 cut(s) 256
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 256
BmrFI CCNGG 3 cut(s) 132, 146, 425
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpuMI CCSGG 3 cut(s) 132, 146, 425
BsaAI YACGTR 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 207, 391
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 76, 131, 304
Bse3DI GCAATG 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 207, 391
BseGI GGATG 2 cut(s) 157, 259
BseLI CCNNNNNNNGG 4 cut(s) 35, 76, 131, 304
BseMI GCAATG 1 cut(s) 95
BseRI GAGGAG 2 cut(s) 59, 117
BseXI GCAGC 3 cut(s) 295, 378, 384
Bsh1236I CGCG 3 cut(s) 77, 337, 402
BshFI GGCC 3 cut(s) 80, 212, 353
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 5 cut(s) 132, 145, 298, 357, 424
BslI CCNNNNNNNGG 4 cut(s) 35, 76, 131, 304
BsnI GGCC 3 cut(s) 80, 212, 353
Bsp1286I GDGCHC 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 1 cut(s) 382
BspACI CCGC 8 cut(s) 29, 77, 102, 239, 341, 354, 402, 411
BspANI GGCC 3 cut(s) 80, 212, 353
BspFNI CGCG 3 cut(s) 77, 337, 402
BspMAI CTGCAG 1 cut(s) 368
BspPI GGATC 1 cut(s) 390
BsrBI CCGCTC 1 cut(s) 341
BsrDI GCAATG 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 207, 391
BssMI GATC 1 cut(s) 382
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 163
BstAUI TGTACA 1 cut(s) 190
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 2 cut(s) 339, 351
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 2 cut(s) 157, 259
BstFNI CGCG 3 cut(s) 77, 337, 402
BstH2I RGCGCY 2 cut(s) 21, 42
BstHHI GCGC 7 cut(s) 20, 41, 61, 313, 337, 402, 430
BstKTI GATC 1 cut(s) 385
BstMBI GATC 1 cut(s) 382
BstMWI GCNNNNNNNGC 5 cut(s) 45, 341, 350, 394, 408
BstSCI CCNGG 3 cut(s) 130, 144, 423
BstSFI CTRYAG 1 cut(s) 364
BstUI CGCG 3 cut(s) 77, 337, 402
BstV1I GCAGC 3 cut(s) 295, 378, 384
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 3 cut(s) 80, 212, 353
BtgI CCRYGG 1 cut(s) 391
BtgZI GCGATG 2 cut(s) 7, 58
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 157, 259
Cac8I GCNNGC 2 cut(s) 339, 351
CfoI GCGC 7 cut(s) 20, 41, 61, 313, 337, 402, 430
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 182, 191
CviAII CATG 1 cut(s) 431
CviJI RGCY 7 cut(s) 80, 124, 212, 231, 308, 353, 397
CviKI_1 RGCY 7 cut(s) 80, 124, 212, 231, 308, 353, 397
CviQI GTAC 2 cut(s) 182, 191
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EciI GGCGGA 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 207
Eco147I AGGCCT 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 256
Eco72I CACGTG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 434
FaiI YATR 1 cut(s) 432
FatI CATG 1 cut(s) 430
FauI CCCGC 2 cut(s) 36, 395
Fnu4HI GCNGC 6 cut(s) 78, 309, 342, 354, 367, 398
FokI GGATG 2 cut(s) 164, 246
Fsp4HI GCNGC 6 cut(s) 78, 309, 342, 354, 367, 398
FspI TGCGCA 1 cut(s) 312
GlaI GCGC 7 cut(s) 19, 40, 60, 312, 336, 401, 429
GluI GCNGC 6 cut(s) 78, 309, 342, 354, 367, 398
HaeII RGCGCY 2 cut(s) 21, 42
HaeIII GGCC 3 cut(s) 80, 212, 353
HapII CCGG 5 cut(s) 132, 145, 298, 357, 424
HhaI GCGC 7 cut(s) 20, 41, 61, 313, 337, 402, 430
Hin1II CATG 1 cut(s) 434
Hin6I GCGC 7 cut(s) 18, 39, 59, 311, 335, 400, 428
HinP1I GCGC 7 cut(s) 18, 39, 59, 311, 335, 400, 428
HinfI GANTC 2 cut(s) 155, 360
HpaII CCGG 5 cut(s) 132, 145, 298, 357, 424
HphI GGTGA 2 cut(s) 193, 256
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 264
Hpy8I GTNNAC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 2 cut(s) 195, 318
HpyCH4V TGCA 2 cut(s) 167, 366
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 341, 350, 394, 408
HpySE526I ACGT 2 cut(s) 195, 318
Hsp92II CATG 1 cut(s) 434
HspAI GCGC 7 cut(s) 18, 39, 59, 311, 335, 400, 428
Kzo9I GATC 1 cut(s) 382
LmnI GCTCC 2 cut(s) 72, 393
LpnPI CCDG 5 cut(s) 145, 158, 311, 335, 370
Lsp1109I GCAGC 3 cut(s) 295, 378, 384
MaeII ACGT 2 cut(s) 195, 318
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 384
MbiI CCGCTC 1 cut(s) 341
MboI GATC 1 cut(s) 382
MfeI CAATTG 1 cut(s) 62
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 2 cut(s) 62, 108
MlyI GAGTC 1 cut(s) 149
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 264
MspI CCGG 5 cut(s) 132, 145, 298, 357, 424
MspR9I CCNGG 3 cut(s) 132, 146, 425
MunI CAATTG 1 cut(s) 62
MvnI CGCG 3 cut(s) 77, 337, 402
MwoI GCNNNNNNNGC 5 cut(s) 45, 341, 350, 394, 408
NciI CCSGG 3 cut(s) 132, 146, 425
NdeII GATC 1 cut(s) 382
NlaIII CATG 1 cut(s) 434
NsbI TGCGCA 1 cut(s) 312
PceI AGGCCT 1 cut(s) 212
PfeI GAWTC 1 cut(s) 360
PfoI TCCNGGA 1 cut(s) 130
PkrI GCNGC 6 cut(s) 79, 310, 343, 355, 368, 399
PleI GAGTC 1 cut(s) 149
PmaCI CACGTG 1 cut(s) 196
PmlI CACGTG 1 cut(s) 196
PpsI GAGTC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 196
PspCI CACGTG 1 cut(s) 196
PspPI GGNCC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 2 cut(s) 183, 192
RsaNI GTAC 2 cut(s) 182, 191
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 6 cut(s) 78, 309, 342, 354, 367, 398
Sau3AI GATC 1 cut(s) 382
Sau96I GGNCC 1 cut(s) 256
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 3 cut(s) 132, 146, 425
SduI GDGCHC 1 cut(s) 201
SetI ASST 6 cut(s) 198, 219, 233, 258, 321, 420
SfcI CTRYAG 1 cut(s) 364
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 2 cut(s) 62, 108
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 8 cut(s) 29, 77, 102, 239, 341, 354, 402, 411
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 3 cut(s) 130, 144, 423
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 2 cut(s) 198, 321
TaqI TCGA 1 cut(s) 158
TasI AATT 2 cut(s) 62, 108
TatI WGTACW 1 cut(s) 190
TauI GCSGC 3 cut(s) 80, 344, 356
TfiI GAWTC 1 cut(s) 360
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseI GCWGC 3 cut(s) 308, 366, 397
TspGWI ACGGA 2 cut(s) 317, 380
VpaK11BI GGWCC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.