Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022746

Physical Location & Seq

Genomic Coordinates Reverse (-)

9103420 .. 9105536

Gene Structure 2117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36614

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCTGTTCCGCCGACTCTGTTTCCGTTTCTGTTTCCATTTTTGCTGTGGCAACGTGGAGCCTGGACGTACATCCATTGAAAAAGAAGATAGTAAGAAGTTGAAGCAAAAGCAACAAGAATGTATGCAGCCAAAGATGGGCAAAATGGATATTGATTATCAGGTCAAATTAAGAGAGAAGAAGCCAGGCATGCTGTCACATGAACTGAAAGAAGGTCTTGGTGTGCCAGATGGTGCTCCTCCGCCATGGCTCATTAACATACAGTATGGCCAACCGTTGTATGGAAACATGTTTGGTGTTCAGCAGCAAGATCAGCCTAATTATGAGAATGAGAAGAATTTCCTCTGTAAGATGCAGGAGATGGGAGGCAAATCCAACAAAAGGACTTCAAGTTTTAGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

134

Amino Acids

15.63

Weight (kDa)

9.17

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF382	PF04037	25 - 55	1e-06	Domain of unknown function (DUF382)
PSP	PF04046	61 - 88	1.6e-08	PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0393571
rosa_laevigata	RLG00000009740
rosa_samantha	Rh4BG044200 Rh4CG051000

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	10, 242
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	3 cut(s)	137, 281, 381
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	80, 103, 390
AjnI	CCWGG	2 cut(s)	61, 184
Alw21I	GWGCWC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	127, 304
ApoI	RAATTY	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	139, 316
BccI	CCATC	3 cut(s)	130, 224, 355
BciT130I	CCWGG	2 cut(s)	63, 186
BisI	GCNGC	2 cut(s)	128, 305
BlsI	GCNGC	2 cut(s)	129, 306
Bme1390I	CCNGG	2 cut(s)	63, 186
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	63, 186
BmsI	GCATC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 281, 381
BseBI	CCWGG	2 cut(s)	63, 186
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	3 cut(s)	137, 281, 381
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	139, 316
BshFI	GGCC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	238
BslI	CCNNNNNNNGG	3 cut(s)	137, 281, 381
BsnI	GGCC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	310
Bsp19I	CCATGG	1 cut(s)	245
BspACI	CCGC	2 cut(s)	10, 242
BspANI	GGCC	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	2 cut(s)	63, 186
Bst4CI	ACNGT	2 cut(s)	264, 276
BstC8I	GCNNGC	1 cut(s)	191
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 313
BstNI	CCWGG	2 cut(s)	63, 186
BstNSI	RCATGY	2 cut(s)	193, 292
BstSCI	CCNGG	2 cut(s)	61, 184
BstV1I	GCAGC	2 cut(s)	139, 316
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	4 cut(s)	190, 200, 246, 289
CviJI	RGCY	6 cut(s)	61, 130, 184, 250, 270, 316
CviKI_1	RGCY	6 cut(s)	61, 130, 184, 250, 270, 316
CviQI	GTAC	1 cut(s)	69
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	268
EciI	GGCGGA	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	61, 184
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	4 cut(s)	193, 203, 249, 292
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	4 cut(s)	189, 199, 245, 288
Fnu4HI	GCNGC	2 cut(s)	128, 305
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	2 cut(s)	128, 305
GluI	GCNGC	2 cut(s)	128, 305
HaeIII	GGCC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	193, 203, 249, 292
HinfI	GANTC	1 cut(s)	15
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	264, 276
HpyCH4IV	ACGT	2 cut(s)	54, 67
HpyCH4V	TGCA	2 cut(s)	127, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 313
HpySE526I	ACGT	2 cut(s)	54, 67
Hsp92II	CATG	4 cut(s)	193, 203, 249, 292
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	2 cut(s)	58, 241
LpnPI	CCDG	7 cut(s)	48, 75, 146, 171, 198, 240, 341
Lsp1109I	GCAGC	2 cut(s)	139, 316
LweI	GCATC	1 cut(s)	342
MaeII	ACGT	2 cut(s)	54, 67
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	3 cut(s)	98, 190, 346
MhlI	GDGCHC	1 cut(s)	238
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	3 cut(s)	167, 319, 337
MluNI	TGGCCA	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	9
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	3 cut(s)	249, 353, 359
Mox20I	TGGCCA	1 cut(s)	270
MroXI	GAANNNNTTC	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	270
MseI	TTAA	2 cut(s)	170, 255
Msp20I	TGGCCA	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	63, 186
MvaI	CCWGG	2 cut(s)	63, 186
MwoI	GCNNNNNNNGC	2 cut(s)	190, 313
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	4 cut(s)	193, 203, 249, 292
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	195
NspI	RCATGY	2 cut(s)	193, 292
PaeI	GCATGC	1 cut(s)	193
PciI	ACATGT	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	129, 306
PleI	GAGTC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	9
PscI	ACATGT	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	61, 184
PspGI	CCWGG	2 cut(s)	61, 184
PspN4I	GGNNCC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	170, 255
SatI	GCNGC	2 cut(s)	128, 305
Sau3AI	GATC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	9
ScrFI	CCNGG	2 cut(s)	63, 186
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	4 cut(s)	57, 70, 165, 217
SfaNI	GCATC	1 cut(s)	342
SphI	GCATGC	1 cut(s)	193
Sse9I	AATT	3 cut(s)	167, 319, 337
SsiI	CCGC	2 cut(s)	10, 242
StyD4I	CCNGG	2 cut(s)	61, 184
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	264, 276
TaiI	ACGT	2 cut(s)	57, 70
TasI	AATT	3 cut(s)	167, 319, 337
Tru1I	TTAA	2 cut(s)	170, 255
Tru9I	TTAA	2 cut(s)	170, 255
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	2 cut(s)	127, 304
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	216
TspGWI	ACGGA	1 cut(s)	14
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	2 cut(s)	193, 292
XcmI	CCANNNNNNNNNTGG	2 cut(s)	44, 278
XmnI	GAANNNNTTC	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.