Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0022746

Physical Location & Seq

Genomic Coordinates Reverse (-)

10184501 .. 10185171

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG051000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGGCAAAATGGATATTGATTATCAGGTCAAATTAAGAGAGAAGAAGCCAGGCATGCTGTCACATGAACTGAAAGAAGGTCTTGGTGTGCCAGATGGTGCTCCTCCGCCATGGCTCATTAACATACAGAGATATGGTCCTCCTCCATCACGTCCACAGTTGAAATCCCTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

58

Amino Acids

6.52

Weight (kDa)

9.16

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSP	PF04046	16 - 55	1.6e-14	PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0393571
rosa_laevigata	RLG00000009740
rosa_samantha	Rh4BG044200 Rh4CG051000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	107
AgsI	TTSAA	1 cut(s)	163
AjiI	CACGTC	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	49, 168
Alw21I	GWGCWC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	103
BccI	CCATC	2 cut(s)	89, 154
BciT130I	CCWGG	2 cut(s)	51, 170
Bme1390I	CCNGG	2 cut(s)	51, 170
Bme18I	GGWCC	1 cut(s)	137
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	137
BmrFI	CCNGG	2 cut(s)	51, 170
BsaJI	CCNNGG	2 cut(s)	110, 168
BseBI	CCWGG	2 cut(s)	51, 170
BseDI	CCNNGG	2 cut(s)	110, 168
BseRI	GAGGAG	2 cut(s)	93, 132
BsiHKAI	GWGCWC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	110, 168
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	2 cut(s)	51, 170
Bst4CI	ACNGT	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	56
BstDSI	CCRYGG	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	2 cut(s)	51, 170
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	49, 168
BtgI	CCRYGG	1 cut(s)	110
BtrI	CACGTC	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	137
CviAII	CATG	3 cut(s)	55, 65, 111
CviJI	RGCY	2 cut(s)	49, 115
CviKI_1	RGCY	2 cut(s)	49, 115
EciI	GGCGGA	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	49, 168
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	3 cut(s)	58, 68, 114
FaiI	YATR	5 cut(s)	56, 66, 112, 125, 135
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FatI	CATG	3 cut(s)	54, 64, 110
Hin1II	CATG	3 cut(s)	58, 68, 114
Hpy166II	GTNNAC	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	3 cut(s)	58, 68, 114
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	5 cut(s)	11, 36, 63, 105, 155
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	60
MboII	GAAGA	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	1 cut(s)	32
MnlI	CCTC	3 cut(s)	114, 150, 153
MseI	TTAA	2 cut(s)	35, 120
MspR9I	CCNGG	2 cut(s)	51, 170
MvaI	CCWGG	2 cut(s)	51, 170
MwoI	GCNNNNNNNGC	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	110
NlaIII	CATG	3 cut(s)	58, 68, 114
NmuCI	GTSAC	1 cut(s)	60
NspI	RCATGY	1 cut(s)	58
PaeI	GCATGC	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	49, 168
PspGI	CCWGG	2 cut(s)	49, 168
PspPI	GGNCC	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	35, 120
Sau96I	GGNCC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	51, 170
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	3 cut(s)	30, 82, 154
SgeI	CNNG	9 cut(s)	38, 62, 63, 67, 77, 95, 104, 123, 162
SinI	GGWCC	1 cut(s)	137
SphI	GCATGC	1 cut(s)	58
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	49, 168
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	1 cut(s)	154
TasI	AATT	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	35, 120
Tru9I	TTAA	2 cut(s)	35, 120
TseFI	GTSAC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.