Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0022746

Physical Location & Seq

Genomic Coordinates Reverse (-)

7949009 .. 7960826

Gene Structure 11818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG044200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCATTCAAGGTTTAATACATTTGCTGGTGAACATGATGATGTTGCAATTCTGAACAGGCGGAACAAGATAAAGAACCAAAAGAGAGGCGTTCCAAACAAGAAAAAGGTCAAATTAAGAGAGAAGAAGCCAGGCATGCTGTCACATGAACTGAAAGAAGGTCTTGGTGTGCCAGATGGTGCTCCTCCGCCATGGCTCATTAACATACAGAGATATGGTCCTCCTCCATCACGTCCACAGTTGAAATCTCTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF382 PSP

Protein Analysis

85

Amino Acids

9.67

Weight (kDa)

10.44

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSP	PF04046	43 - 82	4.6e-14	PSP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0393571
rosa_laevigata	RLG00000009740
rosa_samantha	Rh4BG044200 Rh4CG051000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	61, 188
AgsI	TTSAA	2 cut(s)	9, 244
AjiI	CACGTC	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	130
Alw21I	GWGCWC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	184
BccI	CCATC	2 cut(s)	170, 235
BciT130I	CCWGG	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	218
BmgBI	CACGTC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	191
BseRI	GAGGAG	2 cut(s)	174, 213
BsiHKAI	GWGCWC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	2 cut(s)	61, 188
BssECI	CCNNGG	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	137
BstDSI	CCRYGG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	130
BtgI	CCRYGG	1 cut(s)	191
BtrI	CACGTC	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	218
CviAII	CATG	4 cut(s)	35, 136, 146, 192
CviJI	RGCY	2 cut(s)	130, 196
CviKI_1	RGCY	2 cut(s)	130, 196
EciI	GGCGGA	2 cut(s)	76, 177
Eco130I	CCWWGG	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	191
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	4 cut(s)	38, 139, 149, 195
FaiI	YATR	6 cut(s)	36, 137, 147, 193, 206, 216
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	4 cut(s)	34, 135, 145, 191
Hin1II	CATG	4 cut(s)	38, 139, 149, 195
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	32, 236
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	2 cut(s)	32, 236
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	2 cut(s)	4, 47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	4 cut(s)	38, 139, 149, 195
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	6 cut(s)	12, 43, 117, 144, 186, 236
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	141
MboII	GAAGA	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	2 cut(s)	48, 113
MnlI	CCTC	4 cut(s)	80, 195, 231, 234
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	15, 116, 201
MslI	CAYNNNNRTG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	191
NlaIII	CATG	4 cut(s)	38, 139, 149, 195
NmuCI	GTSAC	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	139
PaeI	GCATGC	1 cut(s)	139
PctI	GAATGC	1 cut(s)	4
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	15, 116, 201
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	4 cut(s)	14, 111, 163, 235
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	39
SphI	GCATGC	1 cut(s)	139
Sse9I	AATT	2 cut(s)	48, 113
SsiI	CCGC	2 cut(s)	61, 188
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	1 cut(s)	235
TasI	AATT	2 cut(s)	48, 113
Tru1I	TTAA	3 cut(s)	15, 116, 201
Tru9I	TTAA	3 cut(s)	15, 116, 201
TseFI	GTSAC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	218
XceI	RCATGY	1 cut(s)	139
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.