Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020532

Physical Location & Seq

Genomic Coordinates Reverse (-)

14332997 .. 14342012

Gene Structure 9016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37012

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCGTCTTCTTTGGTGTATAGAAGAAGTATATGATGCTTTGGCTGAACGCCTTGTTCCTACAGCAGCAGCAATGTCAAATCCAAATTTGAAGCATATTGTGGGTTTGGCTGGTCATCCTGGAGCTGGAAAGAGTACTCTTGCATCTGAAGTAGTACGGACCGTAAACAAGTTATGGCCTCAGAAAGCTTCATCATTGGATTCCCAAGTTACGCCTTTAGATGTGGCTGCAGTTCTTCCCAATTCCCATAGATGGATACCATCTTTACCGTTCTCAGCTGGATGCAATGGAGTGGAAAATCCTGAGGAAGCTCATGCAAGAAGGGGAGCTCCATGGACCTTCAACCCTGAGCTACTACTCAAGTCTTTGAAGACTCTGAGAAGTCAGGGATCAGTATATGCATCTTCATTTGACCATGGTGTTGGAGATCCAGTAGAAGATGATATCTTTGTGAGCATTCAGAATAAAGTGGTCATAGTAGAAGGAAATTATCTGTTCTTGGATAATGGGGTGTGGAAGGAAATATCGTTTATGTTTGACGAGAAGTGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18 PRK

Protein Analysis

184

Amino Acids

20.11

Weight (kDa)

5.51

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020532)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0397901
rosa_multiflora	Rmu_sc0004527.1_g000002
rosa_samantha	Rh4BG078400 Rh7BG317300 Rh7DG402800
rosa_wichuraiana	Rw0G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	397, 422
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	2 cut(s)	136, 156
AfiI	CCNNNNNNNGG	2 cut(s)	125, 252
AgsI	TTSAA	3 cut(s)	91, 343, 370
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	6 cut(s)	125, 188, 278, 311, 329, 352
AluI	AGCT	6 cut(s)	125, 188, 278, 311, 329, 352
Alw21I	GWGCWC	1 cut(s)	331
AlwI	GGATC	2 cut(s)	397, 422
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	3 cut(s)	65, 68, 227
ApoI	RAATTY	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	159, 336
AvaII	GGWCC	2 cut(s)	159, 336
AxyI	CCTNAGG	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	3 cut(s)	77, 80, 214
BccI	CCATC	2 cut(s)	246, 268
BciT130I	CCWGG	1 cut(s)	120
BciVI	GTATCC	1 cut(s)	249
BfmI	CTRYAG	2 cut(s)	60, 228
BfuI	GTATCC	1 cut(s)	249
BisI	GCNGC	3 cut(s)	66, 69, 228
BlsI	GCNGC	3 cut(s)	67, 70, 229
BmcAI	AGTACT	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	2 cut(s)	159, 336
BmgT120I	GGNCC	2 cut(s)	159, 336
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	4 cut(s)	25, 152, 272, 410
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	332, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 252
Bse1I	ACTGG	1 cut(s)	431
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	2 cut(s)	78, 292
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	2 cut(s)	332, 415
BseGI	GGATG	2 cut(s)	115, 287
BseLI	CCNNNNNNNGG	2 cut(s)	125, 252
BseMI	GCAATG	2 cut(s)	78, 292
BseMII	CTCAG	5 cut(s)	194, 288, 294, 339, 368
BseNI	ACTGG	1 cut(s)	431
BseXI	GCAGC	3 cut(s)	77, 80, 214
BshFI	GGCC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	331
BslI	CCNNNNNNNGG	2 cut(s)	125, 252
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	2 cut(s)	389, 427
Bsp19I	CCATGG	2 cut(s)	332, 415
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	5 cut(s)	193, 287, 295, 340, 369
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	2 cut(s)	397, 422
BsrDI	GCAATG	2 cut(s)	78, 292
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	2 cut(s)	332, 415
BssMI	GATC	2 cut(s)	389, 427
BssT1I	CCWWGG	2 cut(s)	332, 415
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	163, 270
BstDEI	CTNAG	5 cut(s)	180, 274, 303, 348, 377
BstDSI	CCRYGG	2 cut(s)	332, 415
BstF5I	GGATG	2 cut(s)	115, 287
BstKTI	GATC	2 cut(s)	392, 430
BstMBI	GATC	2 cut(s)	389, 427
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	2 cut(s)	60, 228
BstV1I	GCAGC	3 cut(s)	77, 80, 214
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	427
Bsu36I	CCTNAGG	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	178
BtgI	CCRYGG	2 cut(s)	332, 415
BtsCI	GGATG	2 cut(s)	115, 287
Cfr13I	GGNCC	2 cut(s)	159, 336
CpoI	CGGWCCG	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	135, 155
CspI	CGGWCCG	1 cut(s)	159
CviAII	CATG	3 cut(s)	314, 333, 416
CviQI	GTAC	2 cut(s)	135, 155
DdeI	CTNAG	5 cut(s)	180, 274, 303, 348, 377
DpnI	GATC	2 cut(s)	391, 429
DpnII	GATC	2 cut(s)	389, 427
Ecl136II	GAGCTC	1 cut(s)	329
Eco130I	CCWWGG	2 cut(s)	332, 415
Eco24I	GRGCYC	1 cut(s)	331
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	159, 336
Eco53kI	GAGCTC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	303
EcoICRI	GAGCTC	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	2 cut(s)	332, 415
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	2 cut(s)	332, 415
FaeI	CATG	3 cut(s)	317, 336, 419
FatI	CATG	3 cut(s)	313, 332, 415
Fnu4HI	GCNGC	3 cut(s)	66, 69, 228
FokI	GGATG	2 cut(s)	102, 294
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	3 cut(s)	66, 69, 228
GluI	GCNGC	3 cut(s)	66, 69, 228
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	178
Hin1II	CATG	3 cut(s)	317, 336, 419
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	2 cut(s)	200, 373
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	4 cut(s)	148, 183, 378, 462
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	4 cut(s)	315, 349, 476, 511
HpyCH4III	ACNGT	2 cut(s)	163, 270
HpyCH4V	TGCA	5 cut(s)	143, 230, 285, 317, 401
HpyF3I	CTNAG	5 cut(s)	180, 274, 303, 348, 377
Hsp92II	CATG	3 cut(s)	317, 336, 419
Kzo9I	GATC	2 cut(s)	389, 427
LmnI	GCTCC	3 cut(s)	122, 326, 334
LpnPI	CCDG	9 cut(s)	96, 105, 111, 132, 264, 315, 360, 371, 444
Lsp1109I	GCAGC	3 cut(s)	77, 80, 214
LweI	GCATC	4 cut(s)	25, 152, 272, 410
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	391, 429
MboI	GATC	2 cut(s)	389, 427
MboII	GAAGA	5 cut(s)	35, 227, 382, 396, 449
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	3 cut(s)	85, 241, 487
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	2 cut(s)	189, 298
Mph1103I	ATGCAT	1 cut(s)	403
MspA1I	CMGCKG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	120
NcoI	CCATGG	2 cut(s)	332, 415
NdeII	GATC	2 cut(s)	389, 427
NlaIII	CATG	3 cut(s)	317, 336, 419
NsiI	ATGCAT	1 cut(s)	403
PctI	GAATGC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	67, 70, 229
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	159, 336
PstI	CTGCAG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	2 cut(s)	136, 156
RsaNI	GTAC	2 cut(s)	135, 155
Rsr2I	CGGWCCG	1 cut(s)	159
RsrII	CGGWCCG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	331
SatI	GCNGC	3 cut(s)	66, 69, 228
Sau3AI	GATC	2 cut(s)	389, 427
Sau96I	GGNCC	2 cut(s)	159, 336
ScaI	AGTACT	1 cut(s)	136
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	7 cut(s)	127, 190, 280, 313, 331, 341, 354
SfaNI	GCATC	4 cut(s)	25, 152, 272, 410
SfcI	CTRYAG	2 cut(s)	60, 228
SinI	GGWCC	2 cut(s)	159, 336
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	85, 241, 487
SstI	GAGCTC	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	2 cut(s)	332, 415
TaaI	ACNGT	2 cut(s)	163, 270
TasI	AATT	3 cut(s)	85, 241, 487
TatI	WGTACW	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	200
TseI	GCWGC	3 cut(s)	65, 68, 227
TspDTI	ATGAA	2 cut(s)	180, 396
TspGWI	ACGGA	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	159, 336
XapI	RAATTY	1 cut(s)	85
ZrmI	AGTACT	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.