Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0020532

Physical Location & Seq

Genomic Coordinates Forward (+)

30721924 .. 30748110

Gene Structure 26187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG317300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCGATCAAAGGAAGCAAAGGATCATACTCCATGGACCTTCAACCCTGAGCTACTACTCAAGTCTTTGAAGACTCTGAGAAGTCAGGGATCAGTATATGCACCTTCATTTGACCATGGTGTTGGAGATCCAGTAGAGGATGATATCTTTGTGAGCATTCAGAATAAAGTGGTCATAGTAGAAGGAAATTATCTGTTCTTGGATAATGGGGTGTGGAAGGAAATATCGTCTATGTTTGATGAGAAGTGTTTCCCAGCTAGTGCAACTCGCTGCCGCCACTCGTTTCCTCTCCACCTTCAGGCGGCGGTGGTCCTCTCAATACCAGCTACTACAATAATGTTGCAATCAACACTGACAGCTCTATCGGAGGACAACGAGAGGCTGATGCGGAGCAACACCATGCTTATGTCTGAGCTCAACCACATGAGAAAGCTTTACAACGATTTCATCTACTTCTTTCATAACCATGTCAAGCTTGGCGCACCAAGCAATTCTTATCCAGTTTCTCTGCTTGGCAACCCAACGCCAAGCTCACACAATCCCAACTCTTCCGCCGCCATAAACAAGCCTCTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18 PRK

Protein Analysis

192

Amino Acids

21.54

Weight (kDa)

6.7

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020532)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0397901
rosa_multiflora	Rmu_sc0004527.1_g000002
rosa_samantha	Rh4BG078400 Rh7BG317300 Rh7DG402800
rosa_wichuraiana	Rw0G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	274, 302, 305, 388, 552, 555
AclWI	GGATC	3 cut(s)	30, 97, 122
AcuI	CTGAAG	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	298, 301
AgsI	TTSAA	2 cut(s)	43, 70
AluBI	AGCT	8 cut(s)	52, 257, 326, 359, 415, 433, 475, 531
AluI	AGCT	8 cut(s)	52, 257, 326, 359, 415, 433, 475, 531
Alw21I	GWGCWC	1 cut(s)	417
AlwI	GGATC	3 cut(s)	30, 97, 122
ApeKI	GCWGC	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	2 cut(s)	36, 310
AvaII	GGWCC	2 cut(s)	36, 310
BanII	GRGCYC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	257
BfaI	CTAG	2 cut(s)	258, 577
BisI	GCNGC	4 cut(s)	271, 274, 303, 555
BlsI	GCNGC	4 cut(s)	272, 275, 304, 556
Bme18I	GGWCC	2 cut(s)	36, 310
BmgT120I	GGNCC	2 cut(s)	36, 310
BmsI	GCATC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	32, 115
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 301
Bse1I	ACTGG	2 cut(s)	131, 500
BseDI	CCNNGG	2 cut(s)	32, 115
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	2 cut(s)	298, 301
BseMII	CTCAG	3 cut(s)	39, 68, 402
BseNI	ACTGG	2 cut(s)	131, 500
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	417
BslI	CCNNNNNNNGG	2 cut(s)	298, 301
BsmI	GAATGC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	5, 22, 89, 127
Bsp19I	CCATGG	2 cut(s)	32, 115
BspACI	CCGC	6 cut(s)	274, 302, 305, 388, 552, 555
BspCNI	CTCAG	3 cut(s)	40, 69, 403
BspPI	GGATC	3 cut(s)	30, 97, 122
BsrI	ACTGG	2 cut(s)	131, 500
BssECI	CCNNGG	2 cut(s)	32, 115
BssMI	GATC	4 cut(s)	5, 22, 89, 127
BssT1I	CCWWGG	2 cut(s)	32, 115
Bst6I	CTCTTC	1 cut(s)	553
BstDEI	CTNAG	3 cut(s)	48, 77, 411
BstDSI	CCRYGG	2 cut(s)	32, 115
BstF5I	GGATG	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	4 cut(s)	8, 25, 92, 130
BstMBI	GATC	4 cut(s)	5, 22, 89, 127
BstMWI	GCNNNNNNNGC	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	127
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	127
BtgI	CCRYGG	2 cut(s)	32, 115
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	36, 310
CviAII	CATG	5 cut(s)	33, 116, 400, 424, 467
DdeI	CTNAG	3 cut(s)	48, 77, 411
DpnI	GATC	4 cut(s)	7, 24, 91, 129
DpnII	GATC	4 cut(s)	5, 22, 89, 127
Eam1104I	CTCTTC	1 cut(s)	553
EarI	CTCTTC	1 cut(s)	553
EciI	GGCGGA	1 cut(s)	541
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	2 cut(s)	32, 115
Eco24I	GRGCYC	1 cut(s)	417
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	36, 310
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	415
EcoRV	GATATC	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	32, 115
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	2 cut(s)	32, 115
FaeI	CATG	5 cut(s)	36, 119, 403, 427, 470
FalI	AAGNNNNNCTT	2 cut(s)	478, 510
FatI	CATG	5 cut(s)	32, 115, 399, 423, 466
Fnu4HI	GCNGC	4 cut(s)	271, 274, 303, 555
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	4 cut(s)	271, 274, 303, 555
FspBI	CTAG	2 cut(s)	258, 577
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	4 cut(s)	271, 274, 303, 555
GsaI	CCCAGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	482
Hin1II	CATG	5 cut(s)	36, 119, 403, 427, 470
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HindIII	AAGCTT	2 cut(s)	431, 473
HinfI	GANTC	1 cut(s)	73
Hpy188I	TCNGA	5 cut(s)	78, 162, 367, 412, 573
HpyAV	CCTTC	5 cut(s)	49, 114, 176, 211, 305
HpyCH4V	TGCA	3 cut(s)	101, 263, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	486
HpyF3I	CTNAG	3 cut(s)	48, 77, 411
Hsp92II	CATG	5 cut(s)	36, 119, 403, 427, 470
HspAI	GCGC	1 cut(s)	480
Kzo9I	GATC	4 cut(s)	5, 22, 89, 127
LmnI	GCTCC	1 cut(s)	390
LpnPI	CCDG	7 cut(s)	60, 71, 144, 267, 284, 336, 513
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	2 cut(s)	258, 577
MalI	GATC	4 cut(s)	7, 24, 91, 129
MboI	GATC	4 cut(s)	5, 22, 89, 127
MboII	GAAGA	2 cut(s)	82, 540
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	2 cut(s)	187, 490
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	6 cut(s)	130, 297, 323, 361, 372, 579
MroXI	GAANNNNTTC	1 cut(s)	248
MslI	CAYNNNNRTG	2 cut(s)	404, 465
Mva1269I	GAATGC	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	486
NcoI	CCATGG	2 cut(s)	32, 115
NdeII	GATC	4 cut(s)	5, 22, 89, 127
NlaIII	CATG	5 cut(s)	36, 119, 403, 427, 470
PctI	GAATGC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	272, 275, 304, 556
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	36, 310
PsuI	RGATCY	1 cut(s)	127
RseI	CAYNNNNRTG	2 cut(s)	404, 465
SacI	GAGCTC	1 cut(s)	417
SatI	GCNGC	4 cut(s)	271, 274, 303, 555
Sau3AI	GATC	4 cut(s)	5, 22, 89, 127
Sau96I	GGNCC	2 cut(s)	36, 310
SchI	GAGTC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	417
SfaNI	GCATC	1 cut(s)	375
SinI	GGWCC	2 cut(s)	36, 310
SmiMI	CAYNNNNRTG	2 cut(s)	404, 465
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	187, 490
SsiI	CCGC	6 cut(s)	274, 302, 305, 388, 552, 555
SspMI	CTAG	2 cut(s)	258, 577
SstI	GAGCTC	1 cut(s)	417
StyI	CCWWGG	2 cut(s)	32, 115
TasI	AATT	2 cut(s)	187, 490
TauI	GCSGC	3 cut(s)	276, 305, 557
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	1 cut(s)	270
TspDTI	ATGAA	3 cut(s)	96, 436, 449
TspRI	CASTG	1 cut(s)	357
VpaK11BI	GGWCC	2 cut(s)	36, 310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	2 cut(s)	258, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.