Rh7DG402800

uridine kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
55530073 .. 55541601
11529 bp
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UTR
Exon/CDS
Intron
Rh7DG402800.1

Sequence Viewer

Length: 198 bp
ATGTTGATGAATATCTTTGGTGTTGGAGATCCAGTAGAGGATGATATTTTTGTGAGCATTCAGAATAAAGTGGTCATAGTAGAAGGAAATTATTTGTTCTTGGATAATGGGGTGTGGAAGGAAATATCGTCTATGTTTGATGAGAAGTGCTCCGCTGGGAGTGAAGCTCTACTGAGCTTGCAGGTCAACTGGGATTGA

Protein Analysis

65

Amino Acids

7.27

Weight (kDa)

4.05

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020532)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0397901
rosa_multiflora Rmu_sc0004527.1_g000002
rosa_samantha Rh4BG078400 Rh7BG317300 Rh7DG402800
rosa_wichuraiana Rw0G002810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
AciI CCGC 1 cut(s) 153
AclWI GGATC 1 cut(s) 23
AluBI AGCT 2 cut(s) 167, 177
AluI AGCT 2 cut(s) 167, 177
Alw21I GWGCWC 1 cut(s) 152
AlwI GGATC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 172
BplI GAGNNNNNCTC 4 cut(s) 134, 166, 151, 183
BsaBI GATNNNNATC 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bse1I ACTGG 2 cut(s) 32, 194
Bse8I GATNNNNATC 1 cut(s) 11
BseGI GGATG 1 cut(s) 46
BseJI GATNNNNATC 1 cut(s) 11
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 2 cut(s) 32, 194
BseYI CCCAGC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 1 cut(s) 23
BsrI ACTGG 2 cut(s) 32, 194
BssMI GATC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BtsCI GGATG 1 cut(s) 46
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 179
CviJI RGCY 2 cut(s) 167, 177
CviKI_1 RGCY 2 cut(s) 167, 177
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
FaiI YATR 2 cut(s) 77, 134
FokI GGATG 1 cut(s) 53
GsaI CCCAGC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 77, 112
HpyCH4V TGCA 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 173
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 4 cut(s) 45, 141, 167, 175
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 1 cut(s) 31
MspA1I CMGCKG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 57
NdeII GATC 1 cut(s) 28
PctI GAATGC 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 155
PsuI RGATCY 1 cut(s) 28
Sau3AI GATC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 152
SetI ASST 3 cut(s) 169, 179, 186
SgeI CNNG 5 cut(s) 44, 112, 168, 190, 194
Sse9I AATT 1 cut(s) 88
SsiI CCGC 1 cut(s) 153
TasI AATT 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.