Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004527.1

Orthogroup ID

OG0020532

Physical Location & Seq

Genomic Coordinates Forward (+)

4152 .. 6918

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004527.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgattctactgctccacctggccgcaataaatcctgaggaagctcatgcaagaaggggaggcgagggatcagtatatgcaccttcatttgaccatggtgttggagatccagtagaggatgatatctttgtgagtattcagaataaagtggtcatagtagaaggaaattatctgttcttggataatggggtgtggaaggaaatatcgtctatgtttgatgagaagtggtcaactgtgggaaatcaaattgtcaaggaaaattctttttggaagccgaagactatcgtggtggtcaatgacacagatgttgattgttgggaggagttgctgattgaggatgaaatgaactcggcaagtactaatttgatatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18 PRK

Protein Analysis

124

Amino Acids

13.88

Weight (kDa)

4.28

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020532)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0397901
rosa_multiflora	Rmu_sc0004527.1_g000002
rosa_samantha	Rh4BG078400 Rh7BG317300 Rh7DG402800
rosa_wichuraiana	Rw0G002810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	76, 101
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
AlwI	GGATC	2 cut(s)	76, 101
AoxI	GGCC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	259
AxyI	CCTNAGG	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	20
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
BmcAI	AGTACT	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bse1I	ACTGG	1 cut(s)	110
Bse21I	CCTNAGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	2 cut(s)	124, 343
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	68, 106
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	28
BspPI	GGATC	2 cut(s)	76, 101
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	68, 106
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	124, 343
BstKTI	GATC	2 cut(s)	71, 109
BstMBI	GATC	2 cut(s)	68, 106
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	106
Bsu36I	CCTNAGG	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	124, 343
Csp6I	GTAC	1 cut(s)	357
CviAII	CATG	2 cut(s)	47, 95
CviJI	RGCY	3 cut(s)	23, 44, 274
CviKI_1	RGCY	3 cut(s)	23, 44, 274
CviQI	GTAC	1 cut(s)	357
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	2 cut(s)	70, 108
DpnII	GATC	2 cut(s)	68, 106
EaeI	YGGCCR	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	94
Eco32I	GATATC	2 cut(s)	124, 369
Eco81I	CCTNAGG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	18
EcoRV	GATATC	2 cut(s)	124, 369
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	50, 98
FaiI	YATR	6 cut(s)	48, 76, 78, 96, 155, 212
FatI	CATG	2 cut(s)	46, 94
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	2 cut(s)	131, 350
Fsp4HI	GCNGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	50, 98
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	4 cut(s)	48, 93, 155, 190
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	50, 80
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	50, 98
Kzo9I	GATC	2 cut(s)	68, 106
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	4 cut(s)	5, 32, 48, 123
MalI	GATC	2 cut(s)	70, 108
MboI	GATC	2 cut(s)	68, 106
MboII	GAAGA	1 cut(s)	289
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	4 cut(s)	166, 246, 259, 361
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	6 cut(s)	31, 53, 58, 109, 313, 328
MseI	TTAA	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	2 cut(s)	68, 106
NlaIII	CATG	2 cut(s)	50, 98
NmeAIII	GCCGAG	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	358
RsaNI	GTAC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	373
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	68, 106
ScaI	AGTACT	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	3 cut(s)	21, 46, 85
Sse9I	AATT	4 cut(s)	166, 246, 259, 361
SsiI	CCGC	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	235
TasI	AATT	4 cut(s)	166, 246, 259, 361
TatI	WGTACW	1 cut(s)	356
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
TspDTI	ATGAA	3 cut(s)	75, 354, 359
XapI	RAATTY	1 cut(s)	259
ZrmI	AGTACT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.